Variant report

Variant	rs702704
Chromosome Location	chr5:57773176-57773177
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs149135	0.84[ASN][1000 genomes]
rs154678	0.84[ASN][1000 genomes]
rs1848511	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[ASN][1000 genomes]
rs2548596	0.88[ASN][1000 genomes]
rs2662621	0.88[ASN][1000 genomes]
rs6450476	0.89[AFR][1000 genomes]
rs702703	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs702705	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs702706	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs702712	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs702714	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs702715	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs702716	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs702718	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[ASN][1000 genomes]
rs702722	0.86[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs702724	0.88[ASN][1000 genomes]
rs832623	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs832625	0.87[ASN][1000 genomes]
rs832628	0.86[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs832630	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs832633	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs832634	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs832635	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs832637	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs832638	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs832640	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs702704	PLK2	cis	cerebellum	SCAN
rs702704	GPBP1	cis	cerebellum	SCAN
rs702704	ERCC8	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57771400-57777000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:57771600-57774200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:57772400-57774400	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr5:57772600-57774200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr5:57772800-57773200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:57772800-57773200	Enhancers	HSMM	muscle
7	chr5:57772800-57773600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr5:57772800-57774400	Enhancers	Primary B cells from peripheral blood	blood
9	chr5:57773000-57773400	Enhancers	Ovary	ovary
10	chr5:57773000-57773600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:57773000-57774200	Enhancers	Primary monocytes fromperipheralblood	blood

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