Variant report

Variant	rs702714
Chromosome Location	chr5:57763937-57763938
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs149135	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs154678	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1848511	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2548596	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2662621	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs702703	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs702704	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs702705	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs702706	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs702711	0.93[EUR][1000 genomes]
rs702712	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs702715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs702716	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs702718	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs702722	0.81[ASW][hapmap];0.93[CEU][hapmap];0.85[GIH][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs702724	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs832623	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs832625	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs832627	0.89[EUR][1000 genomes]
rs832628	0.93[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs832630	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs832633	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs832634	1.00[ASN][1000 genomes]
rs832635	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs832637	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs832638	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs832640	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs702714	FLJ33641	cis	multi-tissue	Pritchard

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57757000-57765600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr5:57763000-57771000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:57763200-57764000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr5:57763200-57765400	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr5:57763200-57765600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:57763400-57765600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr5:57763600-57764000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr5:57763800-57764000	Enhancers	H9 Cell Line	embryonic stem cell

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