Variant report

Variant	rs27295
Chromosome Location	chr5:96358687-96358688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 119 )
Associated
traits (count: 15 )

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10038651	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10044354	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10051637	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10058476	0.86[EUR][1000 genomes]
rs10061936	0.85[ASN][1000 genomes]
rs10069361	0.85[ASN][1000 genomes]
rs10077945	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1046395	0.85[EUR][1000 genomes]
rs1046396	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10476696	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1216566	0.84[EUR][1000 genomes]
rs1216567	0.84[EUR][1000 genomes]
rs1216568	0.82[ASN][1000 genomes]
rs1216571	0.84[EUR][1000 genomes]
rs12716486	0.81[AFR][1000 genomes]
rs13170029	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13358339	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1363907	0.83[EUR][1000 genomes]
rs1363908	0.83[EUR][1000 genomes]
rs1363974	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1363976	0.81[EUR][1000 genomes]
rs1423357	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1423566	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1477364	0.85[EUR][1000 genomes]
rs1544777	0.87[EUR][1000 genomes]
rs18059	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1820148	0.83[EUR][1000 genomes]
rs1820149	0.81[AFR][1000 genomes]
rs193994	0.82[ASN][1000 genomes]
rs2161548	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2351010	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2351011	0.83[EUR][1000 genomes]
rs2432141	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2432142	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs251340	0.83[EUR][1000 genomes]
rs251341	0.82[EUR][1000 genomes]
rs2548224	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2548516	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2548530	0.83[EUR][1000 genomes]
rs2548532	0.83[EUR][1000 genomes]
rs2549783	0.83[EUR][1000 genomes]
rs2549794	0.83[EUR][1000 genomes]
rs2617435	0.81[EUR][1000 genomes]
rs2617439	0.84[EUR][1000 genomes]
rs2617447	0.84[EUR][1000 genomes]
rs27289	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs27290	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs27292	0.82[EUR][1000 genomes]
rs27293	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs27294	0.97[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs27296	0.98[AFR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs27298	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs27299	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs27300	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs27302	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs27305	0.81[EUR][1000 genomes]
rs27306	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs27307	0.94[EUR][1000 genomes]
rs27397	0.81[EUR][1000 genomes]
rs27436	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs27613	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2762	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs27621	0.96[AFR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs27659	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs27660	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs27711	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs27712	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs27747	0.82[EUR][1000 genomes]
rs27993	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs27998	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2859491	0.83[EUR][1000 genomes]
rs2910686	0.84[EUR][1000 genomes]
rs2910687	0.83[EUR][1000 genomes]
rs2910787	0.85[ASN][1000 genomes]
rs2910788	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2910789	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2910793	0.83[EUR][1000 genomes]
rs2927608	0.83[EUR][1000 genomes]
rs2927609	0.83[EUR][1000 genomes]
rs31398	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3797796	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs38029	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs38030	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs38031	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs38032	0.88[EUR][1000 genomes]
rs38033	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs38034	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs38035	0.83[AFR][1000 genomes]
rs38038	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs38039	0.93[EUR][1000 genomes]
rs38040	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs38041	0.81[EUR][1000 genomes]
rs38042	0.81[EUR][1000 genomes]
rs38043	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs38044	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3849749	0.83[EUR][1000 genomes]
rs3909451	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs39602	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs42983	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4360063	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6859168	0.81[EUR][1000 genomes]
rs6870825	0.85[ASN][1000 genomes]
rs6871162	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6887500	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs716848	0.84[EUR][1000 genomes]
rs7703341	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7716222	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7719705	0.85[EUR][1000 genomes]
rs7722694	0.83[AFR][1000 genomes]
rs7726445	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7731592	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7733312	0.85[EUR][1000 genomes]
rs9314181	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv948703	chr5:96078309-96368839	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1028741	chr5:96082401-96372165	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv949058	chr5:96082433-96390619	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	nsv598963	chr5:96084776-96363407	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:15)

SNP	Gene	Cis/trans	Tissue	Source
rs27295	ERAP2	cis	Heart Left Ventricle	GTEx
rs27295	ERAP2	cis	Artery Tibial	GTEx
rs27295	ERAP2	cis	Artery Aorta	GTEx
rs27295	ERAP2	cis	Nerve Tibial	GTEx
rs27295	ERAP2	cis	Esophagus Muscularis	GTEx
rs27295	ERAP2	cis	Skin Sun Exposed Lower leg	GTEx
rs27295	ERAP2	cis	Whole Blood	GTEx
rs27295	ERAP2	cis	Muscle Skeletal	GTEx
rs27295	ERAP2	cis	Thyroid	GTEx
rs27295	ERAP2	cis	lung	GTEx
rs27295	ERAP2	cis	Adipose Subcutaneous	GTEx
rs27295	AC008865.1	cis	Artery Tibial	GTEx
rs27295	LRAP	Cis_1M	lymphoblastoid	RTeQTL
rs27295	ERAP2	cis	Stomach	GTEx
rs27295	ERAP2	cis	Esophagus Mucosa	GTEx

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96304800-96359600	Weak transcription	Hela-S3	cervix
2	chr5:96314000-96360200	Weak transcription	Fetal Brain Male	brain
3	chr5:96315400-96374800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr5:96316000-96360000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr5:96322400-96359600	Weak transcription	Gastric	stomach
6	chr5:96329800-96358800	Weak transcription	Brain Germinal Matrix	brain
7	chr5:96330000-96359800	Weak transcription	Aorta	Aorta
8	chr5:96330400-96359400	Weak transcription	Fetal Brain Female	brain
9	chr5:96333600-96374000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:96333800-96372800	Strong transcription	Placenta	Placenta
11	chr5:96335800-96359600	Weak transcription	Stomach Mucosa	stomach
12	chr5:96336600-96359400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr5:96336600-96359400	Weak transcription	Colonic Mucosa	Colon
14	chr5:96340600-96359800	Weak transcription	NHDF-Ad	bronchial
15	chr5:96340800-96359800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:96341000-96358800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr5:96342600-96374400	Weak transcription	HepG2	liver
18	chr5:96343000-96359000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr5:96343200-96360000	Weak transcription	Brain Angular Gyrus	brain
20	chr5:96345600-96358800	Weak transcription	Small Intestine	intestine
21	chr5:96345800-96359600	Weak transcription	K562	blood
22	chr5:96346600-96372600	Strong transcription	Primary B cells from peripheral blood	blood
23	chr5:96347000-96373600	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr5:96347200-96360400	Weak transcription	Lung	lung
25	chr5:96347200-96363400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr5:96348400-96372400	Strong transcription	Fetal Thymus	thymus
27	chr5:96348400-96374600	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr5:96348600-96366000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr5:96350200-96359200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr5:96350800-96359400	Weak transcription	Psoas Muscle	Psoas
31	chr5:96350800-96359800	Weak transcription	Fetal Kidney	kidney
32	chr5:96350800-96360200	Weak transcription	HSMM	muscle
33	chr5:96351000-96359000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr5:96351000-96359400	Weak transcription	Fetal Lung	lung
35	chr5:96351400-96379000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr5:96352200-96359600	Weak transcription	NHLF	lung
37	chr5:96352200-96359800	Weak transcription	Ovary	ovary
38	chr5:96352200-96372600	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr5:96352800-96359200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr5:96354200-96359400	Weak transcription	Brain Anterior Caudate	brain
41	chr5:96354200-96360000	Weak transcription	HUVEC	blood vessel
42	chr5:96354200-96363800	Weak transcription	Pancreas	Pancrea
43	chr5:96354400-96359200	Weak transcription	Brain Hippocampus Middle	brain
44	chr5:96354400-96359200	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr5:96354600-96359800	Weak transcription	Esophagus	oesophagus
46	chr5:96355800-96358800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr5:96355800-96358800	Weak transcription	Stomach Smooth Muscle	stomach
48	chr5:96355800-96359600	Weak transcription	HSMMtube	muscle
49	chr5:96355800-96372200	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr5:96356000-96358800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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