Variant report

Variant	rs38040
Chromosome Location	chr5:96327663-96327664
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 186 )
Associated
traits (count: 19 )

rSNPs within LD-proxies of this variant (count:178)

rs_ID	r²[population]
rs10038651	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10044354	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10051637	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.91[MKK][hapmap];0.89[YRI][hapmap];0.88[ASN][1000 genomes]
rs10061936	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10069361	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10071975	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10076136	0.90[EUR][1000 genomes]
rs10077945	0.88[ASN][1000 genomes]
rs1019503	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs10434709	0.81[CEU][hapmap];0.81[TSI][hapmap]
rs1046396	0.88[ASN][1000 genomes]
rs10476696	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1056893	0.94[ASW][hapmap];0.96[CEU][hapmap];0.87[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs11135484	0.81[CEU][hapmap];0.81[TSI][hapmap]
rs11135485	0.85[EUR][1000 genomes]
rs1216565	0.96[CEU][hapmap];0.85[YRI][hapmap];0.86[EUR][1000 genomes]
rs1216568	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1216569	0.86[EUR][1000 genomes]
rs1230381	0.85[EUR][1000 genomes]
rs1230382	0.85[EUR][1000 genomes]
rs12516666	0.81[CEU][hapmap]
rs12716486	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13167902	0.81[CEU][hapmap];0.81[TSI][hapmap]
rs13170029	0.88[ASN][1000 genomes]
rs13358339	0.90[ASN][1000 genomes]
rs1363907	0.83[CHD][hapmap]
rs1363974	0.94[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.89[MKK][hapmap];0.89[YRI][hapmap];0.91[ASN][1000 genomes]
rs1363975	0.85[EUR][1000 genomes]
rs1363977	0.85[EUR][1000 genomes]
rs1423357	0.85[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.91[ASN][1000 genomes]
rs1423566	0.88[ASN][1000 genomes]
rs1423568	0.83[EUR][1000 genomes]
rs1559267	0.90[EUR][1000 genomes]
rs1559355	0.81[CEU][hapmap]
rs17087165	0.83[EUR][1000 genomes]
rs171647	0.83[EUR][1000 genomes]
rs18059	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1820149	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs187265	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs193993	0.83[EUR][1000 genomes]
rs193994	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1974871	0.81[TSI][hapmap]
rs1981846	0.92[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs2042383	0.83[EUR][1000 genomes]
rs2042385	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs2112974	0.89[EUR][1000 genomes]
rs2113050	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs2113189	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2113190	0.83[EUR][1000 genomes]
rs2113191	0.83[EUR][1000 genomes]
rs2161548	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[ASN][1000 genomes]
rs2161657	0.96[CEU][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs2161658	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs2247650	0.85[CEU][hapmap]
rs2248374	0.83[EUR][1000 genomes]
rs2255546	0.94[ASW][hapmap];0.96[CEU][hapmap];0.87[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs2255633	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs2255634	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs2255637	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs2278018	0.81[CEU][hapmap]
rs2278019	0.81[CEU][hapmap];0.81[TSI][hapmap]
rs2287988	0.94[ASW][hapmap];0.96[CEU][hapmap];0.87[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs2351010	1.00[ASW][hapmap];0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.91[MKK][hapmap];0.89[YRI][hapmap];0.91[ASN][1000 genomes]
rs2432141	0.88[ASN][1000 genomes]
rs2432142	0.87[ASN][1000 genomes]
rs248215	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs251339	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs251342	0.83[EUR][1000 genomes]
rs251344	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs2548224	0.87[ASN][1000 genomes]
rs2548516	0.88[ASN][1000 genomes]
rs2548520	0.84[EUR][1000 genomes]
rs2548521	0.85[EUR][1000 genomes]
rs2548522	0.85[EUR][1000 genomes]
rs2548523	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs2548524	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs2548526	0.83[EUR][1000 genomes]
rs2548527	0.96[CEU][hapmap];0.81[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs2548528	0.83[EUR][1000 genomes]
rs2548529	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs2548533	0.94[ASW][hapmap];0.96[CEU][hapmap];0.87[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs2548534	0.83[EUR][1000 genomes]
rs2548535	0.82[EUR][1000 genomes]
rs2548536	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs2548537	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs2548538	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs2548539	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs2548540	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs2549781	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs2549782	0.94[ASW][hapmap];0.96[CEU][hapmap];0.87[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs2549784	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs2549785	0.94[ASW][hapmap];0.96[CEU][hapmap];0.87[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs2549787	0.83[EUR][1000 genomes]
rs2549788	0.83[EUR][1000 genomes]
rs2549789	0.83[EUR][1000 genomes]
rs2549790	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs2549791	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs2549792	0.83[EUR][1000 genomes]
rs2549794	0.83[CHD][hapmap]
rs2549795	0.94[ASW][hapmap];0.96[CEU][hapmap];0.87[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs2549796	0.96[CEU][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs2549797	0.94[ASW][hapmap];0.96[CEU][hapmap];0.87[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs2549798	0.81[EUR][1000 genomes]
rs2549799	0.82[EUR][1000 genomes]
rs2549800	0.84[EUR][1000 genomes]
rs2549801	0.85[EUR][1000 genomes]
rs2617435	0.81[ASN][1000 genomes]
rs2617442	0.85[JPT][hapmap]
rs27289	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs27290	0.94[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs27292	0.95[EUR][1000 genomes]
rs27293	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs27294	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs27295	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs27296	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs27298	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs27299	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs27300	0.94[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs27302	0.89[ASN][1000 genomes]
rs27305	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs27306	0.83[CHD][hapmap];0.80[EUR][1000 genomes]
rs27307	0.83[CHD][hapmap];0.80[EUR][1000 genomes]
rs27397	1.00[CEU][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs27436	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs27613	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2762	1.00[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.91[MKK][hapmap];0.88[ASN][1000 genomes]
rs27621	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs27659	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs27711	0.83[CHD][hapmap]
rs27712	0.83[CHD][hapmap]
rs27747	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs27993	0.85[CHD][hapmap]
rs27998	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2910686	0.81[CEU][hapmap];0.81[YRI][hapmap]
rs2910688	0.85[EUR][1000 genomes]
rs2910787	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2910788	0.88[ASN][1000 genomes]
rs2910789	0.88[ASN][1000 genomes]
rs2911134	0.90[JPT][hapmap]
rs31398	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs33934033	0.83[EUR][1000 genomes]
rs3734015	0.81[CEU][hapmap]
rs3797796	0.94[ASN][1000 genomes]
rs38030	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs38033	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs38034	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.91[MKK][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs38035	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs38036	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs38037	0.87[EUR][1000 genomes]
rs38038	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs38041	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs38042	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs38043	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs38044	0.97[AFR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3849750	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs3909451	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.91[MKK][hapmap];0.89[YRI][hapmap];0.91[ASN][1000 genomes]
rs39602	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs42983	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4360063	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.91[ASN][1000 genomes]
rs4869314	0.81[CEU][hapmap]
rs6556943	0.81[EUR][1000 genomes]
rs6859160	0.82[EUR][1000 genomes]
rs6870825	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6871162	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.91[MKK][hapmap];0.89[YRI][hapmap];0.88[ASN][1000 genomes]
rs6873441	0.82[EUR][1000 genomes]
rs6874656	0.83[EUR][1000 genomes]
rs6879678	0.88[EUR][1000 genomes]
rs6887500	0.85[ASN][1000 genomes]
rs7700332	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs7703341	0.85[ASN][1000 genomes]
rs7713127	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7716222	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.91[MKK][hapmap];0.89[YRI][hapmap];0.91[ASN][1000 genomes]
rs7722694	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7726445	0.88[ASN][1000 genomes]
rs7731592	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[ASN][1000 genomes]
rs7736466	1.00[CEU][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs9127	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs9314181	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv948703	chr5:96078309-96368839	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1027472	chr5:96081592-96337550	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv1028741	chr5:96082401-96372165	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv949058	chr5:96082433-96390619	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv598963	chr5:96084776-96363407	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
8	nsv969268	chr5:96317607-96327820	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:19)

SNP	Gene	Cis/trans	Tissue	Source
rs38040	ERAP2	cis	Stomach	GTEx
rs38040	LRAP	Cis_1M	lymphoblastoid	RTeQTL
rs38040	ERAP2	cis	Whole Blood	GTEx
rs38040	ERAP2	cis	Muscle Skeletal	GTEx
rs38040	ERAP2	cis	Skin Sun Exposed Lower leg	GTEx
rs38040	ERAP2	cis	Esophagus Muscularis	GTEx
rs38040	ERAP2	cis	Nerve Tibial	GTEx
rs38040	ERAP2	cis	Adipose Subcutaneous	GTEx
rs38040	ERAP2	cis	Esophagus Mucosa	GTEx
rs38040	ERAP2	cis	lung	GTEx
rs38040	LNPEP	cis	parietal	SCAN
rs38040	ERAP2	cis	Thyroid	GTEx
rs38040	ERAP2	cis	lymphoblastoid	seeQTL
rs38040	ERAP2	cis	parietal	SCAN
rs38040	ERAP2	cis	Artery Aorta	GTEx
rs38040	ERAP2	cis	Heart Left Ventricle	GTEx
rs38040	ERAP2	cis	lymphoblastoid	GTEx
rs38040	ERAP2	cis	Artery Tibial	GTEx
rs38040	ERAP2	cis	cerebellum	SCAN

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96304600-96329600	Weak transcription	Fetal Brain Female	brain
2	chr5:96304600-96335600	Weak transcription	Stomach Mucosa	stomach
3	chr5:96304800-96346600	Weak transcription	Lung	lung
4	chr5:96304800-96359600	Weak transcription	Hela-S3	cervix
5	chr5:96305400-96334200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr5:96313200-96330000	Weak transcription	HSMMtube	muscle
7	chr5:96313400-96342600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr5:96313400-96342600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr5:96314000-96360200	Weak transcription	Fetal Brain Male	brain
10	chr5:96314200-96343600	Strong transcription	Primary B cells from peripheral blood	blood
11	chr5:96314200-96344000	Strong transcription	Primary B cells from cord blood	blood
12	chr5:96314200-96347600	Strong transcription	Fetal Thymus	thymus
13	chr5:96314400-96343800	Strong transcription	Dnd41	blood
14	chr5:96314800-96343200	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr5:96314800-96343800	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr5:96315000-96331000	Strong transcription	Placenta	Placenta
17	chr5:96315400-96374800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr5:96315600-96329200	Weak transcription	Brain Germinal Matrix	brain
19	chr5:96315600-96329600	Weak transcription	Esophagus	oesophagus
20	chr5:96315600-96329600	Weak transcription	HepG2	liver
21	chr5:96315600-96330400	Weak transcription	Spleen	Spleen
22	chr5:96315600-96335600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr5:96315600-96353400	Weak transcription	Pancreas	Pancrea
24	chr5:96315600-96358600	Weak transcription	Brain Substantia Nigra	brain
25	chr5:96316000-96329600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr5:96316000-96330000	Weak transcription	Brain Anterior Caudate	brain
27	chr5:96316000-96338400	Weak transcription	Brain Hippocampus Middle	brain
28	chr5:96316000-96360000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr5:96316200-96335800	Weak transcription	NHLF	lung
30	chr5:96316400-96333600	Weak transcription	HUVEC	blood vessel
31	chr5:96316400-96336000	Weak transcription	Colonic Mucosa	Colon
32	chr5:96316400-96346600	Weak transcription	NH-A	brain
33	chr5:96317200-96332600	Strong transcription	GM12878-XiMat	blood
34	chr5:96317400-96334400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr5:96318000-96330000	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr5:96319800-96331600	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr5:96320000-96330400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr5:96320000-96357600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr5:96320600-96330600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr5:96320800-96332200	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr5:96321000-96331200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr5:96321000-96332200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr5:96321000-96335200	Weak transcription	Colon Smooth Muscle	Colon
44	chr5:96321000-96336200	Weak transcription	Rectal Smooth Muscle	rectum
45	chr5:96321200-96344600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr5:96321600-96329200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr5:96321600-96344800	Weak transcription	Small Intestine	intestine
48	chr5:96322000-96329600	Weak transcription	Fetal Stomach	stomach
49	chr5:96322200-96348600	Weak transcription	Fetal Kidney	kidney
50	chr5:96322200-96349800	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links