The 2.0 version of rSNPBase

Variant report

Variant rs2548528
Chromosome Location chr5:96242074-96242075
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:84 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:96213400-96243800 Weak transcription HepG2 liver
2 chr5:96213400-96247000 Weak transcription Fetal Lung lung
3 chr5:96217600-96250000 Weak transcription Fetal Muscle Trunk muscle
4 chr5:96218000-96264600 Weak transcription Right Ventricle heart
5 chr5:96218600-96259600 Weak transcription HMEC breast
6 chr5:96221600-96269200 Weak transcription Fetal Brain Male brain
7 chr5:96221800-96242200 Strong transcription Dnd41 blood
8 chr5:96222000-96268600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
9 chr5:96222400-96242600 Strong transcription Fetal Thymus thymus
10 chr5:96222400-96247200 Weak transcription Psoas Muscle Psoas
11 chr5:96222400-96258200 Weak transcription Stomach Mucosa stomach
12 chr5:96225200-96244600 Weak transcription Skeletal Muscle Female skeletal muscle
13 chr5:96225600-96245200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
14 chr5:96225600-96266400 Weak transcription Gastric stomach
15 chr5:96226200-96244000 Weak transcription Skeletal Muscle Male skeletal muscle
16 chr5:96229200-96245400 Weak transcription HSMMtube muscle
17 chr5:96229600-96245000 Weak transcription NH-A brain
18 chr5:96229600-96269600 Weak transcription Aorta Aorta
19 chr5:96229800-96256800 Weak transcription NHEK skin
20 chr5:96229800-96256800 Weak transcription Osteobl bone
21 chr5:96229800-96257000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
22 chr5:96229800-96270000 Weak transcription Esophagus oesophagus
23 chr5:96231800-96245000 Weak transcription Colon Smooth Muscle Colon
24 chr5:96232600-96258400 Weak transcription Brain Hippocampus Middle brain
25 chr5:96233000-96255600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
26 chr5:96233000-96256200 Strong transcription Primary T cells fromperipheralblood blood
27 chr5:96233200-96242200 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
28 chr5:96233200-96242600 Strong transcription Primary T regulatory cells fromperipheralblood blood
29 chr5:96233200-96244400 Weak transcription HUVEC blood vessel
30 chr5:96233600-96242600 Strong transcription Primary T helper 17 cells PMA-I stimulated --
31 chr5:96233600-96246000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
32 chr5:96233600-96247600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
33 chr5:96233800-96242400 Strong transcription Primary B cells from cord blood blood
34 chr5:96233800-96256000 Strong transcription Primary B cells from peripheral blood blood
35 chr5:96234000-96242400 Strong transcription Primary hematopoietic stem cells short term culture blood
36 chr5:96234200-96255600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
37 chr5:96236000-96244400 Weak transcription Fetal Adrenal Gland Adrenal Gland
38 chr5:96236600-96242200 Strong transcription Breast Myoepithelial Primary Cells Breast
39 chr5:96237400-96245200 Weak transcription Spleen Spleen
40 chr5:96237400-96269200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
41 chr5:96237600-96242800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
42 chr5:96237600-96244800 Weak transcription Lung lung
43 chr5:96237600-96250600 Weak transcription Hela-S3 cervix
44 chr5:96237800-96265000 Weak transcription Fetal Muscle Leg muscle
45 chr5:96238400-96256800 Weak transcription NHDF-Ad bronchial
46 chr5:96239000-96242600 Strong transcription Thymus Thymus
47 chr5:96239400-96256800 Weak transcription HSMM muscle
48 chr5:96239400-96257200 Weak transcription NHLF lung
49 chr5:96239600-96243800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr5:96239600-96245400 Weak transcription Ovary ovary

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Last update: Aug 31, 2015