Variant report

Variant	rs1363974
Chromosome Location	chr5:96293816-96293817
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:21)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:21 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF143	chr5:96293544-96294101	GM12878	blood:	n/a	n/a
2	POLR2A	chr5:96293432-96294972	Raji	blood:	n/a	n/a
3	MEF2A	chr5:96293573-96294056	GM12878	blood:	n/a	n/a
4	FOXM1	chr5:96293024-96294225	GM12878	blood:	n/a	n/a
5	RUNX3	chr5:96292858-96294250	GM12878	blood:	n/a	n/a
6	SPI1	chr5:96293609-96293968	GM12891	blood:	n/a	n/a
7	ATF2	chr5:96292850-96294042	GM12878	blood:	n/a	n/a
8	IKZF1	chr5:96292882-96294409	GM12878	blood:	n/a	n/a
9	EBF1	chr5:96293082-96294022	GM12878	blood:	n/a	n/a
10	BCLAF1	chr5:96292830-96293830	GM12878	blood:	n/a	n/a
11	NFATC1	chr5:96293492-96294512	GM12878	blood:	n/a	n/a
12	NFIC	chr5:96292799-96294407	GM12878	blood:	n/a	n/a
13	PML	chr5:96292899-96294557	GM12878	blood:	n/a	n/a
14	BATF	chr5:96293504-96294046	GM12878	blood:	n/a	n/a
15	NFIC	chr5:96292910-96294200	GM12878	blood:	n/a	n/a
16	RUNX3	chr5:96292796-96294109	GM12878	blood:	n/a	n/a
17	FOXM1	chr5:96293566-96294108	GM12878	blood:	n/a	n/a
18	STAT5A	chr5:96292981-96294039	GM12878	blood:	n/a	n/a
19	EBF1	chr5:96293567-96293969	GM12878	blood:	n/a	n/a
20	ATF2	chr5:96292883-96294145	GM12878	blood:	n/a	n/a
21	MTA3	chr5:96292826-96294125	GM12878	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:96268234..96272758-chr5:96290815..96294670,4	K562	blood:
2	chr5:96293790..96295520-chr5:96295788..96298658,2	K562	blood:
3	chr5:96270050..96274625-chr5:96293478..96297387,4	MCF-7	breast:

No data

Variant related genes	Relation type
LNPEP	TF binding region
ENSG00000247121	Chromatin interaction
ENSG00000200884	Chromatin interaction
ENSG00000113441	Chromatin interaction

Extended variants
information (count: 168 )
Associated
traits (count: 25 )

rSNPs within LD-proxies of this variant (count:160)

rs_ID	r²[population]
rs10038651	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10044354	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10051637	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10058476	0.88[CEU][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10061936	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10069361	0.94[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10071975	0.85[CEU][hapmap]
rs10076136	0.81[EUR][1000 genomes]
rs10077945	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1046395	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1046396	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10476696	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1056893	1.00[ASW][hapmap];0.82[CEU][hapmap];0.87[LWK][hapmap];0.83[MKK][hapmap];0.89[YRI][hapmap]
rs1216565	0.81[CEU][hapmap];0.96[YRI][hapmap]
rs1216566	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1216567	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1216568	0.93[ASN][1000 genomes]
rs1216571	0.86[EUR][1000 genomes]
rs1230358	0.85[MEX][hapmap];0.83[TSI][hapmap]
rs12716486	0.85[CEU][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs13170029	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13358339	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1363907	0.85[CEU][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes]
rs1363908	0.85[EUR][1000 genomes]
rs1363976	0.82[EUR][1000 genomes]
rs1423357	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1423566	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1477364	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs1544777	0.89[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1559267	0.81[EUR][1000 genomes]
rs18059	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.82[MEX][hapmap];0.89[YRI][hapmap];0.87[ASN][1000 genomes]
rs1820148	0.85[EUR][1000 genomes]
rs1820149	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs187265	0.82[CEU][hapmap];0.89[YRI][hapmap]
rs193994	0.94[ASN][1000 genomes]
rs2042385	0.82[CEU][hapmap]
rs2112974	0.80[EUR][1000 genomes]
rs2113050	0.80[EUR][1000 genomes]
rs2113189	0.83[CEU][hapmap];0.87[YRI][hapmap]
rs2161548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2161657	0.82[CEU][hapmap]
rs2161658	0.82[CEU][hapmap];0.89[YRI][hapmap]
rs2247650	0.89[YRI][hapmap]
rs2255546	1.00[ASW][hapmap];0.82[CEU][hapmap];0.87[LWK][hapmap];0.83[MKK][hapmap];0.89[YRI][hapmap]
rs2255633	0.82[CEU][hapmap];0.89[YRI][hapmap]
rs2255634	0.82[CEU][hapmap];0.89[YRI][hapmap]
rs2255637	0.82[CEU][hapmap];0.89[YRI][hapmap]
rs2287988	1.00[ASW][hapmap];0.82[CEU][hapmap];0.87[LWK][hapmap];0.83[MKK][hapmap];0.89[YRI][hapmap]
rs2351010	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351011	0.85[EUR][1000 genomes]
rs2432141	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2432142	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs248215	0.85[CEU][hapmap]
rs251340	0.85[EUR][1000 genomes]
rs251341	0.83[EUR][1000 genomes]
rs251344	0.82[CEU][hapmap]
rs2548224	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2548226	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2548516	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2548523	0.82[CEU][hapmap];0.89[YRI][hapmap]
rs2548524	0.82[CEU][hapmap];0.89[YRI][hapmap]
rs2548527	0.82[CEU][hapmap];0.81[LWK][hapmap]
rs2548530	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs2548532	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs2548533	1.00[ASW][hapmap];0.82[CEU][hapmap];0.87[LWK][hapmap];0.83[MKK][hapmap];0.89[YRI][hapmap]
rs2548536	0.87[YRI][hapmap]
rs2548537	0.85[CEU][hapmap];0.89[YRI][hapmap]
rs2548538	0.81[CEU][hapmap];0.89[YRI][hapmap]
rs2548539	0.81[CEU][hapmap];0.88[YRI][hapmap]
rs2548540	0.82[CEU][hapmap];0.89[YRI][hapmap]
rs2549778	0.85[MEX][hapmap];0.83[TSI][hapmap]
rs2549781	0.82[CEU][hapmap]
rs2549782	1.00[ASW][hapmap];0.82[CEU][hapmap];0.87[LWK][hapmap];0.85[MKK][hapmap];0.89[YRI][hapmap]
rs2549783	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs2549785	1.00[ASW][hapmap];0.82[CEU][hapmap];0.87[LWK][hapmap];0.83[MKK][hapmap];0.89[YRI][hapmap]
rs2549790	0.80[CEU][hapmap];0.89[YRI][hapmap]
rs2549791	0.82[CEU][hapmap]
rs2549794	0.89[CEU][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs2549795	1.00[ASW][hapmap];0.82[CEU][hapmap];0.87[LWK][hapmap];0.83[MKK][hapmap];0.89[YRI][hapmap]
rs2549796	0.82[CEU][hapmap]
rs2549797	1.00[ASW][hapmap];0.82[CEU][hapmap];0.87[LWK][hapmap];0.83[MKK][hapmap];0.89[YRI][hapmap]
rs2617435	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2617439	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2617442	0.85[JPT][hapmap]
rs2617447	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs27289	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs27290	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs27293	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs27294	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.85[ASN][1000 genomes]
rs27295	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs27296	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.83[ASN][1000 genomes]
rs27298	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs27299	0.83[ASN][1000 genomes]
rs27300	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.82[MEX][hapmap];0.97[MKK][hapmap];0.88[TSI][hapmap];0.89[YRI][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs27302	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs27306	0.89[CEU][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs27307	0.89[CEU][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs27397	0.85[CEU][hapmap]
rs27436	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs27613	0.94[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.84[MKK][hapmap];0.89[YRI][hapmap];0.88[ASN][1000 genomes]
rs2762	0.94[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];0.99[MKK][hapmap];0.95[TSI][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs27621	0.83[ASN][1000 genomes]
rs27659	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs27660	0.87[EUR][1000 genomes]
rs27711	0.89[CEU][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs27712	0.89[CEU][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs27747	0.85[CEU][hapmap]
rs27993	0.89[CEU][hapmap];0.85[CHD][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs27998	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2859491	0.85[EUR][1000 genomes]
rs2910686	1.00[CEU][hapmap];0.84[YRI][hapmap];0.87[EUR][1000 genomes]
rs2910687	0.85[EUR][1000 genomes]
rs2910787	0.94[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2910788	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2910789	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2910793	0.85[EUR][1000 genomes]
rs2911134	0.90[JPT][hapmap]
rs2927608	0.85[EUR][1000 genomes]
rs2927609	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs31398	0.86[ASN][1000 genomes]
rs3797796	0.92[CEU][hapmap];0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs38029	0.87[EUR][1000 genomes]
rs38030	0.85[ASN][1000 genomes]
rs38031	0.87[EUR][1000 genomes]
rs38032	0.84[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs38033	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs38034	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs38035	0.85[CEU][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs38036	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs38038	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs38039	0.88[EUR][1000 genomes]
rs38040	0.94[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.89[MKK][hapmap];0.89[YRI][hapmap];0.91[ASN][1000 genomes]
rs38041	0.85[CEU][hapmap]
rs38043	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs38044	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3849749	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs3849750	0.82[CEU][hapmap]
rs3909451	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.99[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs39602	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs42983	0.83[ASN][1000 genomes]
rs4360063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6556942	0.84[CEU][hapmap]
rs6859168	0.83[EUR][1000 genomes]
rs6870825	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6871162	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6887500	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs716848	0.86[EUR][1000 genomes]
rs7700332	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs7703341	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7705093	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7713127	0.85[CEU][hapmap]
rs7716222	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7719705	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7722694	0.88[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7726445	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7731592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7733312	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7736466	0.85[CEU][hapmap]
rs9127	0.81[CEU][hapmap]
rs9314181	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv948703	chr5:96078309-96368839	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1027472	chr5:96081592-96337550	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv1028741	chr5:96082401-96372165	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv949058	chr5:96082433-96390619	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv598963	chr5:96084776-96363407	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
8	nsv531967	chr5:96127842-96302702	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:25)

SNP	Gene	Cis/trans	Tissue	Source
rs1363974	C5orf36	cis	parietal	SCAN
rs1363974	ERAP2	cis	Thyroid	GTEx
rs1363974	ERAP2	cis	Muscle Skeletal	GTEx
rs1363974	ERAP2	cis	Esophagus Muscularis	GTEx
rs1363974	AC008865.1	cis	Artery Tibial	GTEx
rs1363974	ERAP2	cis	Whole Blood	GTEx
rs1363974	ERAP2	cis	Artery Tibial	GTEx
rs1363974	LNPEP	cis	normal skin	skin_eQTL
rs1363974	ERAP2	cis	lymphoblastoid	GTEx
rs1363974	LRAP	cis	normal skin	skin_eQTL
rs1363974	ERAP2	cis	Skin Sun Exposed Lower leg	GTEx
rs1363974	ERAP2	cis	Heart Left Ventricle	GTEx
rs1363974	ERAP2	cis	Artery Aorta	GTEx
rs1363974	ERAP2	cis	parietal	SCAN
rs1363974	ERAP2	cis	Stomach	GTEx
rs1363974	LRAP	cis	lesional skin	skin_eQTL
rs1363974	LRAP	Cis_1M	lymphoblastoid	RTeQTL
rs1363974	ERAP2	cis	Esophagus Mucosa	GTEx
rs1363974	ERAP2	cis	Nerve Tibial	GTEx
rs1363974	LRAP	cis	uninvolved skin	skin_eQTL
rs1363974	ERAP2	cis	lung	GTEx
rs1363974	ERAP2	cis	cerebellum	SCAN
rs1363974	ERAP2	cis	Adipose Subcutaneous	GTEx
rs1363974	ERAP2	cis	lymphoblastoid	seeQTL
rs1363974	LNPEP	cis	parietal	SCAN

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96273000-96299200	Weak transcription	Aorta	Aorta
2	chr5:96274600-96298400	Weak transcription	HSMM	muscle
3	chr5:96277800-96303800	Weak transcription	Pancreas	Pancrea
4	chr5:96278000-96296000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:96278200-96314400	Weak transcription	Fetal Intestine Large	intestine
6	chr5:96279800-96298400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:96279800-96303800	Weak transcription	Esophagus	oesophagus
8	chr5:96282200-96303800	Weak transcription	Spleen	Spleen
9	chr5:96283400-96296600	Weak transcription	NHDF-Ad	bronchial
10	chr5:96285400-96296000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr5:96285400-96304400	Weak transcription	Fetal Intestine Small	intestine
12	chr5:96286400-96303800	Weak transcription	Right Ventricle	heart
13	chr5:96288400-96303800	Weak transcription	Fetal Stomach	stomach
14	chr5:96288800-96296200	Weak transcription	Osteobl	bone
15	chr5:96288800-96296800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:96289000-96294400	Weak transcription	Left Ventricle	heart
17	chr5:96289000-96297600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr5:96289000-96297800	Weak transcription	Right Atrium	heart
19	chr5:96289000-96298800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr5:96289200-96296000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr5:96289800-96297600	Weak transcription	HMEC	breast
22	chr5:96289800-96297800	Weak transcription	Stomach Mucosa	stomach
23	chr5:96290000-96294200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr5:96290000-96297800	Weak transcription	Fetal Kidney	kidney
25	chr5:96290000-96298800	Weak transcription	Fetal Lung	lung
26	chr5:96290200-96298200	Weak transcription	Colon Smooth Muscle	Colon
27	chr5:96290200-96298600	Weak transcription	Rectal Smooth Muscle	rectum
28	chr5:96290600-96295000	Enhancers	Primary T cells fromperipheralblood	blood
29	chr5:96290800-96295000	Enhancers	Primary B cells from peripheral blood	blood
30	chr5:96290800-96295400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr5:96290800-96296600	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr5:96290800-96298000	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr5:96291200-96295000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr5:96291200-96297600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr5:96291400-96294400	Enhancers	Primary hematopoietic stem cells	blood
36	chr5:96291400-96297200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr5:96291600-96294200	Enhancers	Primary T cells from cord blood	blood
38	chr5:96291800-96297800	Weak transcription	HUVEC	blood vessel
39	chr5:96292200-96294200	Weak transcription	Placenta	Placenta
40	chr5:96292200-96297800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr5:96292600-96295000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr5:96292800-96294400	Enhancers	Liver	Liver
43	chr5:96292800-96294400	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr5:96292800-96294600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
45	chr5:96292800-96295000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
46	chr5:96292800-96299400	Enhancers	Primary neutrophils fromperipheralblood	blood
47	chr5:96292800-96299800	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr5:96293000-96294400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr5:96293000-96294400	Enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr5:96293000-96294400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood

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