Variant report

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1073339	0.93[EUR][1000 genomes]
rs1073340	0.93[EUR][1000 genomes]
rs11724	0.85[EUR][1000 genomes]
rs1233418	0.90[EUR][1000 genomes]
rs1233421	0.86[EUR][1000 genomes]
rs1233422	0.86[EUR][1000 genomes]
rs1233423	0.86[EUR][1000 genomes]
rs1233425	0.94[EUR][1000 genomes]
rs1233426	0.86[EUR][1000 genomes]
rs1233427	0.86[EUR][1000 genomes]
rs1592409	0.83[EUR][1000 genomes]
rs2223611	0.85[EUR][1000 genomes]
rs2523425	0.85[EUR][1000 genomes]
rs2523427	0.93[EUR][1000 genomes]
rs2523429	0.87[EUR][1000 genomes]
rs2745400	0.80[EUR][1000 genomes]
rs2745402	0.83[EUR][1000 genomes]
rs2745403	0.85[EUR][1000 genomes]
rs2745406	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2745408	0.81[EUR][1000 genomes]
rs2745409	0.86[EUR][1000 genomes]
rs362513	0.89[EUR][1000 genomes]
rs362514	0.85[EUR][1000 genomes]
rs362540	0.86[EUR][1000 genomes]
rs362544	0.94[EUR][1000 genomes]
rs362546	0.86[EUR][1000 genomes]
rs378956	0.93[EUR][1000 genomes]
rs399166	0.82[EUR][1000 genomes]
rs414282	0.88[EUR][1000 genomes]
rs414390	0.90[EUR][1000 genomes]
rs417374	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs419957	0.82[EUR][1000 genomes]
rs422241	0.90[EUR][1000 genomes]
rs422302	0.85[EUR][1000 genomes]
rs444013	0.85[EUR][1000 genomes]
rs446198	0.82[EUR][1000 genomes]
rs453658	0.85[EUR][1000 genomes]
rs909967	0.94[EUR][1000 genomes]
rs909968	0.86[EUR][1000 genomes]
rs969931	0.93[EUR][1000 genomes]
rs9968	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2745411	SNX31	trans	parietal	SCAN
rs2745411	ZSCAN23	cis	parietal	SCAN
rs2745411	BTN1A1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29515200-29521000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search: