Variant report

Variant	rs419957
Chromosome Location	chr6:29505769-29505770
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29498758..29502303-chr6:29502366..29506492,4	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1073339	0.84[EUR][1000 genomes]
rs1073340	0.84[EUR][1000 genomes]
rs11724	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1233418	0.92[EUR][1000 genomes]
rs1233421	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1233422	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1233423	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1233425	0.86[EUR][1000 genomes]
rs1233426	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1233427	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1592409	0.89[EUR][1000 genomes]
rs2223611	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2523425	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2523427	0.84[EUR][1000 genomes]
rs2745402	0.89[EUR][1000 genomes]
rs2745403	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2745406	0.85[EUR][1000 genomes]
rs2745408	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2745409	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2745411	0.82[EUR][1000 genomes]
rs362513	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs362514	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs362540	0.88[EUR][1000 genomes]
rs362544	0.86[EUR][1000 genomes]
rs362546	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs370731	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs378956	0.89[EUR][1000 genomes]
rs394075	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs399166	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs414282	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs414390	0.92[EUR][1000 genomes]
rs417374	0.89[EUR][1000 genomes]
rs422241	0.91[EUR][1000 genomes]
rs422302	0.87[EUR][1000 genomes]
rs444013	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs446198	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs453658	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs909967	0.86[EUR][1000 genomes]
rs909968	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs969931	0.84[EUR][1000 genomes]
rs9968	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29497000-29515000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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