Variant report

Variant	rs9968
Chromosome Location	chr6:29501037-29501038
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29498758..29502303-chr6:29502366..29506492,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OR2H2-2	chr6:29498829-29501345	ENSG00000224582.1
2	lnc-OR2H2-2	chr6:29498829-29501345	NONHSAT108525
3	lnc-OR2H2-2	chr6:29498829-29501345	NONHSAT108526
4	lnc-OR2H2-2	chr6:29499857-29501345	NONHSAT108527

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1073339	0.85[EUR][1000 genomes]
rs1073340	0.85[EUR][1000 genomes]
rs11724	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1233418	0.91[EUR][1000 genomes]
rs1233421	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1233422	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233423	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233425	0.87[EUR][1000 genomes]
rs1233426	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1233427	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1592409	0.90[EUR][1000 genomes]
rs2223611	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2523425	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2523427	0.85[EUR][1000 genomes]
rs2745402	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2745403	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2745406	0.86[EUR][1000 genomes]
rs2745408	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2745409	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2745411	0.81[EUR][1000 genomes]
rs362513	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs362514	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs362540	0.87[EUR][1000 genomes]
rs362544	0.87[EUR][1000 genomes]
rs362546	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs370731	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs378956	0.88[EUR][1000 genomes]
rs394075	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs399166	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs414282	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs414390	0.91[EUR][1000 genomes]
rs417374	0.88[EUR][1000 genomes]
rs419957	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs422241	0.90[EUR][1000 genomes]
rs422302	0.86[EUR][1000 genomes]
rs444013	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs446198	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs453658	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs909967	0.87[EUR][1000 genomes]
rs909968	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs969931	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424039	chr6:29439297-29504564	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv10807	chr6:29498328-29501339	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29497000-29515000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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