Variant report

Variant	rs1073339
Chromosome Location	chr6:29493770-29493771
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1073340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11724	0.82[EUR][1000 genomes]
rs1233418	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1233421	0.90[EUR][1000 genomes]
rs1233422	0.90[EUR][1000 genomes]
rs1233423	0.89[EUR][1000 genomes]
rs1233425	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233426	0.90[EUR][1000 genomes]
rs1233427	0.91[EUR][1000 genomes]
rs1592409	0.90[EUR][1000 genomes]
rs2223611	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2523425	0.92[EUR][1000 genomes]
rs2523427	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2523429	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2745400	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2745402	0.90[EUR][1000 genomes]
rs2745403	0.92[EUR][1000 genomes]
rs2745406	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2745408	0.85[EUR][1000 genomes]
rs2745409	0.90[EUR][1000 genomes]
rs2745411	0.93[EUR][1000 genomes]
rs362513	0.84[EUR][1000 genomes]
rs362514	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs362540	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs362544	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs362546	0.90[EUR][1000 genomes]
rs378956	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs414282	0.88[EUR][1000 genomes]
rs414390	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs417374	0.90[EUR][1000 genomes]
rs419957	0.84[EUR][1000 genomes]
rs422241	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs422302	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs444013	0.82[EUR][1000 genomes]
rs446198	0.84[EUR][1000 genomes]
rs453658	0.82[EUR][1000 genomes]
rs909967	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs909968	0.90[EUR][1000 genomes]
rs969931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9968	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424039	chr6:29439297-29504564	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv883528	chr6:29447724-29494897	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv883529	chr6:29464365-29494897	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv966616	chr6:29479346-29495253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29468600-29496200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:29492400-29493800	Enhancers	H9 Cell Line	embryonic stem cell
3	chr6:29492800-29493800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:29493000-29494600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:29493000-29494600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:29493000-29496400	Weak transcription	Pancreas	Pancrea
7	chr6:29493200-29496000	Weak transcription	Liver	Liver

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