Variant report

Variant	rs2745406
Chromosome Location	chr6:29496083-29496084
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29494254..29496248-chr6:29505741..29508107,2	K562	blood:
2	chr6:29490586..29492205-chr6:29493882..29496471,2	K562	blood:

Variant related genes	Relation type
ENSG00000229281	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1073339	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1073340	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11724	0.83[EUR][1000 genomes]
rs1233418	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1233421	0.91[EUR][1000 genomes]
rs1233422	0.91[EUR][1000 genomes]
rs1233423	0.90[EUR][1000 genomes]
rs1233425	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1233426	0.91[EUR][1000 genomes]
rs1233427	0.92[EUR][1000 genomes]
rs1592409	0.89[EUR][1000 genomes]
rs2223611	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2523425	0.91[EUR][1000 genomes]
rs2523427	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2523429	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2745400	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2745402	0.89[EUR][1000 genomes]
rs2745403	0.91[EUR][1000 genomes]
rs2745408	0.86[EUR][1000 genomes]
rs2745409	0.91[EUR][1000 genomes]
rs2745411	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs362513	0.85[EUR][1000 genomes]
rs362514	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs362540	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs362544	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs362546	0.91[EUR][1000 genomes]
rs378956	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs399166	0.80[EUR][1000 genomes]
rs414282	0.88[EUR][1000 genomes]
rs414390	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs417374	0.91[EUR][1000 genomes]
rs419957	0.85[EUR][1000 genomes]
rs422241	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs422302	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs444013	0.83[EUR][1000 genomes]
rs446198	0.85[EUR][1000 genomes]
rs453658	0.83[EUR][1000 genomes]
rs909967	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs909968	0.91[EUR][1000 genomes]
rs969931	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9968	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424039	chr6:29439297-29504564	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29468600-29496200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:29493000-29496400	Weak transcription	Pancreas	Pancrea
3	chr6:29496000-29496400	Enhancers	Liver	Liver

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