Variant report

Variant	rs362513
Chromosome Location	chr6:29528318-29528319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:41399363..41401698-chr6:29527999..29529519,2	K562	blood:
2	chr17:41464180..41467868-chr6:29527999..29530999,6	K562	blood:
3	chr17:41391927..41394445-chr6:29528019..29529519,2	K562	blood:
4	chr3:73159072..73161621-chr6:29527999..29530999,8	K562	blood:
5	chr11:62607697..62609203-chr6:29528019..29529519,2	K562	blood:
6	chr3:73159072..73161626-chr6:29527999..29530999,7	K562	blood:
7	chr13:90583688..90585209-chr6:29527999..29529519,2	K562	blood:
8	chr17:41380915..41383268-chr6:29527999..29529519,2	K562	blood:
9	chr11:62607620..62609203-chr6:29528019..29529519,2	K562	blood:
10	chr17:41464362..41467656-chr6:29527999..29529519,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000236383	Chromatin interaction
ENSG00000188825	Chromatin interaction
ENSG00000223247	Chromatin interaction
ENSG00000133316	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1073339	0.84[EUR][1000 genomes]
rs1073340	0.84[EUR][1000 genomes]
rs11724	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233418	0.83[EUR][1000 genomes]
rs1233421	0.85[EUR][1000 genomes]
rs1233422	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1233423	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1233425	0.86[EUR][1000 genomes]
rs1233426	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1233427	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1592409	0.88[EUR][1000 genomes]
rs2223611	0.87[EUR][1000 genomes]
rs2523425	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2523427	0.84[EUR][1000 genomes]
rs2745402	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2745403	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2745406	0.85[EUR][1000 genomes]
rs2745408	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2745409	0.85[EUR][1000 genomes]
rs2745411	0.89[EUR][1000 genomes]
rs362514	0.87[EUR][1000 genomes]
rs362544	0.86[EUR][1000 genomes]
rs362546	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs370731	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs378956	0.85[EUR][1000 genomes]
rs394075	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs399166	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs414282	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs414390	0.83[EUR][1000 genomes]
rs417374	0.85[EUR][1000 genomes]
rs419957	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs422241	0.82[EUR][1000 genomes]
rs444013	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs446198	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs453658	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs909967	0.86[EUR][1000 genomes]
rs909968	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs969931	0.84[EUR][1000 genomes]
rs9968	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv5239	chr6:29527407-29566446	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29528000-29529000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:29528000-29530000	Enhancers	GM12878-XiMat	blood
3	chr6:29528000-29530000	Enhancers	HepG2	liver
4	chr6:29528200-29529000	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links