Variant report

Variant	rs2769346
Chromosome Location	chr6:167370999-167371000
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PAX5	chr6:167370535-167371111	GM12878	blood:	n/a	n/a
2	YY1	chr6:167369513-167371558	HepG2	liver:	n/a	chr6:167370099-167370108 chr6:167369776-167369785 chr6:167371353-167371365 chr6:167369773-167369782
3	NFIC	chr6:167369930-167372152	HepG2	liver:	n/a	n/a
4	HEY1	chr6:167370676-167371054	K562	blood:	n/a	n/a
5	POLR2A	chr6:167369802-167372163	HepG2	liver:	n/a	n/a
6	MXI1	chr6:167368808-167371038	SK-N-SH	brain:	n/a	n/a
7	POLR2A	chr6:167369525-167371253	K562	blood:	n/a	n/a
8	RCOR1	chr6:167370966-167371140	K562	blood:	n/a	n/a
9	RAD21	chr6:167370899-167371001	H1-hESC	embryonic stem cell:	n/a	n/a
10	FOSL2	chr6:167369802-167371143	HepG2	liver:	n/a	n/a
11	POLR2A	chr6:167370654-167371488	GM12892	blood:	n/a	n/a
12	NFIC	chr6:167369776-167372186	HepG2	liver:	n/a	n/a
13	ZMIZ1	chr6:167370631-167371384	K562	blood:	n/a	n/a
14	MYBL2	chr6:167369501-167372122	HepG2	liver:	n/a	n/a
15	POLR2A	chr6:167368638-167371430	GM12892	blood:	n/a	n/a
16	CEBPB	chr6:167370843-167371513	GM12878	blood:	n/a	n/a
17	ZNF263	chr6:167368679-167371080	HEK293-T-REx	kidney:	n/a	n/a
18	POLR2A	chr6:167370611-167371488	GM12891	blood:	n/a	n/a
19	NFATC1	chr6:167370703-167371127	GM12878	blood:	n/a	n/a
20	CREB1	chr6:167369344-167371588	HepG2	liver:	n/a	n/a
21	BHLHE40	chr6:167370640-167371134	HepG2	liver:	n/a	n/a
22	RCOR1	chr6:167370050-167371444	HepG2	liver:	n/a	n/a
23	ELF1	chr6:167368614-167371195	GM12878	blood:	n/a	chr6:167369742-167369753 chr6:167369776-167369785 chr6:167369863-167369875 chr6:167370741-167370750 chr6:167368958-167368969 chr6:167370740-167370751 chr6:167370740-167370751 chr6:167369743-167369752 chr6:167369479-167369491
24	POLR2A	chr6:167370022-167371644	HepG2	liver:	n/a	n/a
25	RCOR1	chr6:167369611-167371386	K562	blood:	n/a	n/a
26	POLR2A	chr6:167368639-167371572	GM18505	blood:	n/a	n/a
27	MAX	chr6:167368501-167371864	HepG2	liver:	n/a	chr6:167369457-167369467
28	POLR2A	chr6:167369574-167371193	HepG2	liver:	n/a	n/a
29	JUND	chr6:167370565-167371033	HepG2	liver:	n/a	n/a
30	BHLHE40	chr6:167369817-167371960	GM12878	blood:	n/a	chr6:167370180-167370196
31	POLR2A	chr6:167369386-167371259	K562	blood:	n/a	n/a
32	NRF1	chr6:167370901-167371243	GM12878	blood:	n/a	n/a
33	FOXM1	chr6:167370269-167371280	GM12878	blood:	n/a	n/a
34	HCFC1	chr6:167369754-167371159	K562	blood:	n/a	n/a
35	TAF1	chr6:167369486-167371168	HepG2	liver:	n/a	n/a
36	POLR2A	chr6:167369496-167371190	GM12878	blood:	n/a	n/a
37	POLR2A	chr6:167368732-167371266	NB4	blood:	n/a	n/a
38	STAT3	chr6:167370752-167371513	GM12878	blood:	n/a	n/a
39	POLR2A	chr6:167369786-167371207	GM10847	blood:	n/a	n/a
40	MAFK	chr6:167370934-167371410	K562	blood:	n/a	n/a
41	PML	chr6:167369626-167371501	GM12878	blood:	n/a	n/a
42	EGR1	chr6:167370641-167371149	K562	blood:	n/a	chr6:167370971-167370985 chr6:167370756-167370770 chr6:167370758-167370768
43	SP1	chr6:167370645-167371127	GM12878	blood:	n/a	chr6:167370719-167370728 chr6:167370718-167370727
44	POLR2A	chr6:167370484-167371412	K562	blood:	n/a	n/a
45	TAF1	chr6:167369460-167371141	HepG2	liver:	n/a	n/a
46	CBX3	chr6:167370635-167371282	K562	blood:	n/a	n/a
47	EP300	chr6:167370594-167371279	K562	blood:	n/a	chr6:167370715-167370731 chr6:167370743-167370750
48	TCF12	chr6:167370562-167371071	HepG2	liver:	n/a	n/a
49	POLR2A	chr6:167369596-167371979	HepG2	liver:	n/a	n/a
50	SIN3AK20	chr6:167370543-167371200	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:167370784..167372453-chr6:167373625..167375404,2	K562	blood:
2	chr6:167369620..167371640-chr6:167412068..167415220,3	K562	blood:
3	chr6:167364990..167367805-chr6:167369090..167372947,3	K562	blood:
4	chr6:167368436..167372370-chr6:167409956..167415121,7	MCF-7	breast:
5	chr6:167368335..167372073-chr6:167409735..167414257,6	K562	blood:
6	chr6:167368539..167373039-chr6:167409933..167412837,4	MCF-7	breast:
7	chr6:167370155..167372073-chr6:167409744..167411701,2	K562	blood:

Variant related genes	Relation type
ENSG00000249141	TF binding region
RNASET2	TF binding region
ENSG00000227598	Chromatin interaction
ENSG00000213066	Chromatin interaction
ENSG00000272980	Chromatin interaction
ENSG00000026297	Chromatin interaction
ENSG00000265828	Chromatin interaction

Extended variants
information (count: 133 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs1044059	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10946198	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10946199	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1187530	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1187532	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1211447	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13192426	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1590257	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1620933	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1743439	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1743440	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1743441	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1794693	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1794694	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1794696	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1794697	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1794699	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1794700	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1811120	0.85[EUR][1000 genomes]
rs1819333	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2013815	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2015864	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2149083	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2149084	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2149085	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2149090	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2149091	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2149093	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2345571	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2345573	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs239934	0.90[EUR][1000 genomes]
rs239935	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2757042	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2757044	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2757046	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2757050	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2757052	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2757054	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2769347	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2769348	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2769349	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2769351	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2769352	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2769354	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2769355	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs364283	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs364451	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs365189	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs376097	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs376551	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs376574	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs377232	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs377753	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs385863	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs386548	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs387733	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs388406	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs389946	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs389956	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs393558	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs393727	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs394522	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs397713	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs398278	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs400063	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs400176	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs400837	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs402191	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs402749	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs404222	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs405553	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs406095	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs407515	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs408040	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs408080	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs408087	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs408918	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs409356	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs413232	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs414437	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs415842	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs415890	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs415987	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs416131	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs421214	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs422094	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs422562	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs422694	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs422780	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs424185	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs425039	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs427824	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs428805	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs429083	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs430097	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs430145	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs430293	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs430477	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs433191	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs434093	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs436625	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs436707	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs439237	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs439553	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs442298	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs443570	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs444210	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs444988	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs447042	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs448060	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs453184	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4710147	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4710160	0.82[EUR][1000 genomes]
rs4710161	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4997107	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5020533	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6920364	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6939196	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs86755	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs932644	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9348211	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9457247	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9459827	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv948634	chr6:167200671-167838993	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
5	nsv482507	chr6:167282376-167474915	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
6	nsv532074	chr6:167320656-167781977	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
7	nsv1031039	chr6:167324021-167741439	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
8	nsv538543	chr6:167324021-167741439	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
9	nsv1026972	chr6:167335031-167671042	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
10	nsv1034359	chr6:167359643-167384714	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs2769346	AL133458.1	cis	Whole Blood	GTEx
rs2769346	RNASET2	cis	Esophagus Mucosa	GTEx
rs2769346	RNASET2	cis	Skin Sun Exposed Lower leg	GTEx
rs2769346	AL133458.1	cis	lung	GTEx
rs2769346	RNASET2	cis	Whole Blood	GTEx

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167367200-167372000	Flanking Active TSS	Primary B cells from cord blood	blood
2	chr6:167368400-167371000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
3	chr6:167368600-167371000	Active TSS	Primary T killer memory cells from peripheral blood	blood
4	chr6:167368600-167371200	Active TSS	H9 Cell Line	embryonic stem cell
5	chr6:167368600-167371400	Flanking Active TSS	Primary hematopoietic stem cells	blood
6	chr6:167368600-167371400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:167368800-167371000	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr6:167368800-167371000	Active TSS	Fetal Intestine Large	intestine
9	chr6:167368800-167371200	Flanking Active TSS	Adipose Nuclei	Adipose
10	chr6:167368800-167371200	Active TSS	HSMM	muscle
11	chr6:167369000-167371000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
12	chr6:167369000-167371000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:167369000-167371000	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr6:167369000-167371000	Active TSS	NHDF-Ad	bronchial
15	chr6:167369000-167371200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
16	chr6:167369000-167371400	Flanking Active TSS	Stomach Smooth Muscle	stomach
17	chr6:167369200-167371000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:167369200-167371000	Active TSS	Ovary	ovary
19	chr6:167369200-167371000	Active TSS	Psoas Muscle	Psoas
20	chr6:167369200-167371000	Active TSS	Stomach Mucosa	stomach
21	chr6:167369200-167371200	Active TSS	Left Ventricle	heart
22	chr6:167369200-167371200	Active TSS	Right Atrium	heart
23	chr6:167369400-167371000	Active TSS	Duodenum Smooth Muscle	Duodenum
24	chr6:167369400-167371000	Active TSS	Rectal Mucosa Donor 29	rectum
25	chr6:167369400-167371000	Active TSS	Rectal Smooth Muscle	rectum
26	chr6:167369400-167371000	Active TSS	Thymus	Thymus
27	chr6:167369400-167371000	Active TSS	K562	blood
28	chr6:167369400-167371200	Active TSS	Brain Angular Gyrus	brain
29	chr6:167369400-167371200	Active TSS	Brain Anterior Caudate	brain
30	chr6:167369600-167371000	Active TSS	iPS-20b Cell Line	embryonic stem cell
31	chr6:167369600-167371000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:167369600-167371000	Active TSS	Brain Substantia Nigra	brain
33	chr6:167369600-167371000	Active TSS	Colon Smooth Muscle	Colon
34	chr6:167369800-167371000	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr6:167369800-167371200	Active TSS	HepG2	liver
36	chr6:167370200-167371000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:167370200-167371000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
38	chr6:167370200-167371000	Flanking Active TSS	Placenta	Placenta
39	chr6:167370200-167371000	Flanking Active TSS	HMEC	breast
40	chr6:167370200-167371000	Flanking Active TSS	NH-A	brain
41	chr6:167370200-167371200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr6:167370200-167371200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr6:167370200-167371200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
44	chr6:167370200-167371200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:167370200-167371200	Flanking Active TSS	Liver	Liver
46	chr6:167370200-167371200	Flanking Active TSS	Colonic Mucosa	Colon
47	chr6:167370200-167371200	Flanking Active TSS	Fetal Muscle Leg	muscle
48	chr6:167370200-167371200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
49	chr6:167370200-167371200	Flanking Active TSS	Dnd41	blood
50	chr6:167370200-167371400	Active TSS	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links