Variant report

Variant	rs2769347
Chromosome Location	chr6:167371737-167371738
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr6:167369930-167372152	HepG2	liver:	n/a	n/a
2	POLR2A	chr6:167369802-167372163	HepG2	liver:	n/a	n/a
3	NFIC	chr6:167369776-167372186	HepG2	liver:	n/a	n/a
4	MYBL2	chr6:167369501-167372122	HepG2	liver:	n/a	n/a
5	TCF12	chr6:167371533-167372186	HepG2	liver:	n/a	n/a
6	MAX	chr6:167368501-167371864	HepG2	liver:	n/a	chr6:167369457-167369467
7	BHLHE40	chr6:167369817-167371960	GM12878	blood:	n/a	chr6:167370180-167370196
8	POLR2A	chr6:167371550-167372177	HepG2	liver:	n/a	n/a
9	POLR2A	chr6:167369596-167371979	HepG2	liver:	n/a	n/a
10	REST	chr6:167369757-167372069	HepG2	liver:	n/a	chr6:167370011-167370031 chr6:167370084-167370097 chr6:167370181-167370194 chr6:167370406-167370419
11	POLR2A	chr6:167369525-167372091	GM12878	blood:	n/a	n/a
12	CEBPD	chr6:167371570-167372027	HepG2	liver:	n/a	n/a
13	SPI1	chr6:167371714-167373302	GM12878	blood:	n/a	chr6:167372969-167372978 chr6:167373237-167373250
14	POLR2A	chr6:167369741-167373327	HepG2	liver:	n/a	n/a
15	POLR2A	chr6:167371649-167372233	GM12892	blood:	n/a	n/a
16	MBD4	chr6:167370432-167371888	HepG2	liver:	n/a	n/a
17	BHLHE40	chr6:167371321-167371930	HepG2	liver:	n/a	n/a
18	POLR2A	chr6:167368758-167373878	GM12891	blood:	n/a	n/a
19	CHD1	chr6:167368696-167371944	GM12878	blood:	n/a	chr6:167370249-167370259 chr6:167370153-167370163 chr6:167369451-167369461 chr6:167370255-167370262
20	HEY1	chr6:167368760-167373820	HepG2	liver:	n/a	chr6:167369448-167369463 chr6:167369857-167369872 chr6:167369766-167369781
21	RCOR1	chr6:167369861-167371786	GM12878	blood:	n/a	n/a
22	MBD4	chr6:167369829-167372052	HepG2	liver:	n/a	n/a
23	YY1	chr6:167370615-167371737	HepG2	liver:	n/a	chr6:167371353-167371365
24	POLR2A	chr6:167369684-167371919	GM12878	blood:	n/a	n/a
25	SP1	chr6:167371550-167372212	HepG2	liver:	n/a	n/a
26	POLR2A	chr6:167371688-167372162	GM12878	blood:	n/a	n/a
27	POLR2A	chr6:167368732-167372087	GM19099	blood:	n/a	n/a
28	MYBL2	chr6:167371388-167373307	HepG2	liver:	n/a	n/a
29	POLR2A	chr6:167369717-167371893	GM12878	blood:	n/a	n/a
30	EP300	chr6:167371715-167372236	HepG2	liver:	n/a	n/a
31	POLR2A	chr6:167369479-167373352	HepG2	liver:	n/a	n/a
32	POLR2A	chr6:167368729-167372079	GM18951	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:167367121..167370566-chr6:167371148..167375087,4	K562	blood:
2	chr6:167370784..167372453-chr6:167373625..167375404,2	K562	blood:
3	chr6:167364990..167367805-chr6:167369090..167372947,3	K562	blood:
4	chr6:167368436..167372370-chr6:167409956..167415121,7	MCF-7	breast:
5	chr6:167368335..167372073-chr6:167409735..167414257,6	K562	blood:
6	chr6:167368539..167373039-chr6:167409933..167412837,4	MCF-7	breast:
7	chr6:167370155..167372073-chr6:167409744..167411701,2	K562	blood:

Variant related genes	Relation type
RNASET2	TF binding region
ENSG00000249141	TF binding region
ENSG00000249141	Chromatin interaction
ENSG00000213066	Chromatin interaction
ENSG00000265828	Chromatin interaction
ENSG00000026297	Chromatin interaction
ENSG00000227598	Chromatin interaction
ENSG00000272980	Chromatin interaction

Extended variants
information (count: 133 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs1044059	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10946198	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10946199	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1187530	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1187532	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1211447	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13192426	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1590257	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1620933	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1743439	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1743440	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1743441	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1794693	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1794694	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1794696	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1794697	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1794699	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1794700	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1811120	0.85[EUR][1000 genomes]
rs1819333	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2013815	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2015864	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2149083	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2149084	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2149085	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2149090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2149091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2149093	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2345571	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2345573	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs239934	0.91[EUR][1000 genomes]
rs239935	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2757042	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2757044	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2757046	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2757050	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2757052	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2757054	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2769346	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2769348	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2769349	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769351	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2769352	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2769354	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2769355	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs364283	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs364451	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs365189	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs376097	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs376551	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs376574	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs377232	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs377753	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs385863	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs386548	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs387733	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs388406	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs389946	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs389956	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs393558	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs393727	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs394522	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs397713	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs398278	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs400063	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs400176	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs400837	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs402191	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs402749	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs404222	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs405553	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs406095	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs407515	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs408040	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs408080	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs408087	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs408918	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs409356	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs413232	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs414437	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs415842	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs415890	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs415987	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs416131	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs421214	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs422094	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs422562	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs422694	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs422780	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs424185	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs425039	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs427824	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs428805	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs429083	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs430097	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs430145	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs430293	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs430477	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs433191	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs434093	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs436625	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs436707	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs439237	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs439553	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs442298	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs443570	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs444210	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs444988	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs447042	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs448060	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs453184	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4710147	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4710160	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4710161	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4997107	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs5020533	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6920364	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6939196	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs86755	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs932644	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9348211	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9457247	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9459827	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv948634	chr6:167200671-167838993	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
5	nsv482507	chr6:167282376-167474915	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
6	nsv532074	chr6:167320656-167781977	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
7	nsv1031039	chr6:167324021-167741439	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
8	nsv538543	chr6:167324021-167741439	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
9	nsv1026972	chr6:167335031-167671042	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
10	nsv1034359	chr6:167359643-167384714	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2769347	AL133458.1	cis	Whole Blood	GTEx
rs2769347	RNASET2	cis	Skin Sun Exposed Lower leg	GTEx
rs2769347	RNASET2	cis	Whole Blood	GTEx
rs2769347	RNASET2	cis	Esophagus Mucosa	GTEx

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167367200-167372000	Flanking Active TSS	Primary B cells from cord blood	blood
2	chr6:167370200-167371800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr6:167370200-167373800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
4	chr6:167370400-167373400	Weak transcription	Fetal Kidney	kidney
5	chr6:167370600-167371800	Flanking Active TSS	GM12878-XiMat	blood
6	chr6:167370800-167373400	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr6:167371000-167372000	Enhancers	Lung	lung
8	chr6:167371000-167372200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:167371000-167372400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:167371000-167372400	Weak transcription	HUVEC	blood vessel
11	chr6:167371000-167372800	Weak transcription	NH-A	brain
12	chr6:167371000-167373600	Enhancers	Fetal Stomach	stomach
13	chr6:167371000-167373800	Enhancers	Spleen	Spleen
14	chr6:167371200-167371800	Flanking Active TSS	HepG2	liver
15	chr6:167371200-167372400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:167371200-167372400	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr6:167371200-167372400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr6:167371200-167372400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:167371200-167372400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
20	chr6:167371200-167372400	Weak transcription	Small Intestine	intestine
21	chr6:167371200-167372400	Enhancers	Dnd41	blood
22	chr6:167371200-167372600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:167371200-167372600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr6:167371200-167372600	Enhancers	Colonic Mucosa	Colon
25	chr6:167371200-167372600	Enhancers	Fetal Intestine Large	intestine
26	chr6:167371200-167372600	Enhancers	Fetal Thymus	thymus
27	chr6:167371200-167373000	Weak transcription	Brain Germinal Matrix	brain
28	chr6:167371200-167373200	Weak transcription	Brain Hippocampus Middle	brain
29	chr6:167371200-167373400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr6:167371200-167373400	Weak transcription	Osteobl	bone
31	chr6:167371200-167374400	Enhancers	Stomach Mucosa	stomach
32	chr6:167371400-167371800	Enhancers	K562	blood
33	chr6:167371400-167372000	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr6:167371400-167372200	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr6:167371400-167372400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr6:167371400-167372400	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr6:167371400-167372400	Enhancers	Primary B cells from peripheral blood	blood
38	chr6:167371400-167372400	Enhancers	Primary T cells from cord blood	blood
39	chr6:167371400-167372400	Enhancers	Primary hematopoietic stem cells	blood
40	chr6:167371400-167372400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr6:167371400-167372400	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr6:167371400-167372400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
43	chr6:167371400-167372400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr6:167371400-167372400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr6:167371400-167372400	Enhancers	Primary T killer memory cells from peripheral blood	blood
46	chr6:167371400-167372400	Weak transcription	Duodenum Mucosa	Duodenum
47	chr6:167371400-167372400	Enhancers	Rectal Mucosa Donor 29	rectum
48	chr6:167371400-167372400	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr6:167371400-167372400	Enhancers	Thymus	Thymus
50	chr6:167371400-167372600	Weak transcription	H9 Cell Line	embryonic stem cell

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