Variant report

Variant	rs2771257
Chromosome Location	chr10:94057935-94057936
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94050110..94053607-chr10:94055704..94058110,3	K562	blood:
2	chr10:94051288..94054115-chr10:94056033..94058456,2	MCF-7	breast:
3	chr10:94048555..94050723-chr10:94056799..94059082,2	K562	blood:

Variant related genes	Relation type
ENSG00000198060	Chromatin interaction
ENSG00000107864	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1034076	1.00[YRI][hapmap]
rs12251149	1.00[YRI][hapmap]
rs12251266	1.00[YRI][hapmap]
rs12263606	1.00[YRI][hapmap]
rs1329216	1.00[YRI][hapmap]
rs1935866	1.00[YRI][hapmap]
rs2026054	1.00[YRI][hapmap]
rs2265196	1.00[YRI][hapmap]
rs2767653	1.00[YRI][hapmap]
rs2797641	1.00[YRI][hapmap]
rs701847	1.00[YRI][hapmap]
rs855700	1.00[YRI][hapmap]
rs855705	1.00[YRI][hapmap]
rs855712	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94052000-94111800	Weak transcription	Gastric	stomach
2	chr10:94052200-94059600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:94052200-94065800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:94052200-94071000	Weak transcription	Fetal Intestine Large	intestine
5	chr10:94052200-94109400	Weak transcription	Esophagus	oesophagus
6	chr10:94052400-94058400	Weak transcription	Left Ventricle	heart
7	chr10:94052400-94059000	Weak transcription	Primary B cells from cord blood	blood
8	chr10:94052400-94060200	Weak transcription	Aorta	Aorta
9	chr10:94052400-94062800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:94052400-94063200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:94052400-94063200	Weak transcription	Brain Anterior Caudate	brain
12	chr10:94052400-94070800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:94052400-94080600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:94052400-94101200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr10:94052400-94101600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr10:94052400-94108800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr10:94052400-94114600	Weak transcription	Colonic Mucosa	Colon
18	chr10:94052600-94058400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr10:94052600-94060400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:94052600-94060800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr10:94052600-94061800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr10:94052600-94062200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:94052600-94063200	Weak transcription	Brain Substantia Nigra	brain
24	chr10:94052600-94063600	Weak transcription	Brain Angular Gyrus	brain
25	chr10:94052600-94065200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr10:94052600-94068200	Weak transcription	Small Intestine	intestine
27	chr10:94052600-94070800	Weak transcription	NHDF-Ad	bronchial
28	chr10:94052600-94071600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr10:94052600-94077200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr10:94052600-94102000	Weak transcription	NHLF	lung
31	chr10:94052600-94109400	Weak transcription	HSMMtube	muscle
32	chr10:94052800-94058000	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr10:94052800-94058000	Weak transcription	Stomach Mucosa	stomach
34	chr10:94052800-94059000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr10:94052800-94061000	Weak transcription	Primary T cells from cord blood	blood
36	chr10:94052800-94063000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr10:94052800-94063000	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr10:94052800-94063200	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr10:94052800-94063200	Weak transcription	Colon Smooth Muscle	Colon
40	chr10:94052800-94063800	Weak transcription	Adipose Nuclei	Adipose
41	chr10:94052800-94072000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr10:94052800-94072800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr10:94052800-94087400	Weak transcription	K562	blood
44	chr10:94052800-94088600	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr10:94053000-94058600	Weak transcription	Thymus	Thymus
46	chr10:94053000-94060400	Weak transcription	Osteobl	bone
47	chr10:94053000-94061200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr10:94053000-94063000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr10:94053000-94063600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr10:94053000-94070800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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