Variant report

Variant	rs2797641
Chromosome Location	chr10:93883385-93883386
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93847007..93848850-chr10:93883133..93885140,2	MCF-7	breast:
2	chr10:93882596..93884456-chr10:93889822..93892647,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11186857	1.00[AMR][1000 genomes]
rs11186889	1.00[AMR][1000 genomes]
rs12243966	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251149	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12251266	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12251521	1.00[AMR][1000 genomes]
rs12259277	1.00[AMR][1000 genomes]
rs12260687	1.00[AMR][1000 genomes]
rs12263606	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs1711841	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1935866	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2767653	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2771257	1.00[YRI][hapmap]
rs2797646	1.00[AMR][1000 genomes]
rs701845	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs701847	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs833379	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs833381	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs833382	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs855700	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855705	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855711	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855712	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855713	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855714	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93859200-93901400	Weak transcription	Primary B cells from cord blood	blood
2	chr10:93868000-93901800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:93871000-93887200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr10:93871800-93884400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr10:93874000-93885000	Weak transcription	Small Intestine	intestine
6	chr10:93874600-93899600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:93875000-93883800	Weak transcription	Fetal Intestine Small	intestine
8	chr10:93878200-93885000	Enhancers	Liver	Liver
9	chr10:93881400-93885400	Enhancers	Aorta	Aorta
10	chr10:93881400-93885400	Enhancers	Brain Cingulate Gyrus	brain
11	chr10:93881400-93885400	Enhancers	Ovary	ovary
12	chr10:93881400-93885400	Enhancers	Rectal Smooth Muscle	rectum
13	chr10:93881400-93886200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr10:93881400-93886200	Enhancers	Brain Anterior Caudate	brain
15	chr10:93881400-93886200	Enhancers	Colon Smooth Muscle	Colon
16	chr10:93881400-93886200	Enhancers	Psoas Muscle	Psoas
17	chr10:93881400-93886200	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr10:93881400-93886200	Enhancers	Stomach Smooth Muscle	stomach
19	chr10:93881400-93886400	Enhancers	Fetal Heart	heart
20	chr10:93881400-93886400	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr10:93881600-93883400	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr10:93881600-93884200	Enhancers	Hela-S3	cervix
23	chr10:93881600-93884800	Flanking Active TSS	HepG2	liver
24	chr10:93881600-93885400	Enhancers	Brain Substantia Nigra	brain
25	chr10:93881600-93885800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:93881800-93886400	Enhancers	Stomach Mucosa	stomach
27	chr10:93882000-93884600	Enhancers	Fetal Lung	lung
28	chr10:93882000-93885600	Enhancers	Brain Hippocampus Middle	brain
29	chr10:93882000-93886000	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr10:93882000-93886200	Enhancers	HUVEC	blood vessel
31	chr10:93882200-93883400	Weak transcription	Esophagus	oesophagus
32	chr10:93882200-93884800	Weak transcription	Gastric	stomach
33	chr10:93882400-93883800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:93882400-93884600	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr10:93882400-93885400	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr10:93882400-93886400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr10:93882400-93886400	Enhancers	HMEC	breast
38	chr10:93882600-93883600	Weak transcription	Fetal Kidney	kidney
39	chr10:93882600-93883600	Enhancers	Lung	lung
40	chr10:93882600-93883800	Enhancers	Fetal Intestine Large	intestine
41	chr10:93882600-93885400	Enhancers	A549	lung
42	chr10:93882600-93886200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr10:93882600-93886200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr10:93882600-93886200	Enhancers	NHEK	skin
45	chr10:93882600-93886200	Enhancers	Osteobl	bone
46	chr10:93882800-93883400	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr10:93882800-93885400	Enhancers	Adipose Nuclei	Adipose
48	chr10:93882800-93886200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr10:93882800-93886200	Enhancers	Right Ventricle	heart
50	chr10:93883000-93884000	Enhancers	Right Atrium	heart

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