Variant report

Variant	rs1711841
Chromosome Location	chr10:93812334-93812335
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93809868..93812362-chr10:93812392..93814570,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11186857	1.00[AMR][1000 genomes]
rs11186889	1.00[AMR][1000 genomes]
rs12243966	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251149	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12251266	1.00[AMR][1000 genomes]
rs12251521	1.00[AMR][1000 genomes]
rs12259277	1.00[AMR][1000 genomes]
rs12260687	1.00[AMR][1000 genomes]
rs12263606	1.00[YRI][hapmap]
rs1890897	1.00[YRI][hapmap]
rs1935866	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2767653	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2797641	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2797646	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs701845	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs701847	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs833379	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs833381	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs833382	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855700	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855705	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855711	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855712	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855713	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855714	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1042818	chr10:93715483-93855032	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv895893	chr10:93747260-93875264	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv551923	chr10:93804974-93835969	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93787400-93818400	Weak transcription	Colonic Mucosa	Colon
2	chr10:93787400-93840000	Weak transcription	Small Intestine	intestine
3	chr10:93787600-93828000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:93788400-93814200	Weak transcription	HepG2	liver
5	chr10:93789800-93816400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:93791800-93838400	Weak transcription	Brain Substantia Nigra	brain
7	chr10:93792400-93814800	Weak transcription	Hela-S3	cervix
8	chr10:93792800-93837800	Weak transcription	Brain Angular Gyrus	brain
9	chr10:93793000-93814600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:93793200-93812400	Weak transcription	Placenta	Placenta
11	chr10:93794400-93812400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr10:93794400-93814200	Weak transcription	Osteobl	bone
13	chr10:93794400-93837200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr10:93795800-93824200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:93796200-93840800	Weak transcription	Psoas Muscle	Psoas
16	chr10:93799200-93824000	Weak transcription	HSMMtube	muscle
17	chr10:93805600-93817200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:93806000-93817600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr10:93806000-93819400	Weak transcription	Brain Germinal Matrix	brain
20	chr10:93807000-93812800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:93808000-93812400	Weak transcription	Lung	lung
22	chr10:93808000-93812600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr10:93808000-93814600	Weak transcription	Primary B cells from cord blood	blood
24	chr10:93808000-93816600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr10:93808000-93817000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr10:93808000-93820000	Weak transcription	Fetal Brain Female	brain
27	chr10:93808000-93825400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr10:93808000-93825600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr10:93808000-93842600	Weak transcription	Fetal Lung	lung
30	chr10:93808200-93812400	Weak transcription	Thymus	Thymus
31	chr10:93808200-93817200	Weak transcription	Esophagus	oesophagus
32	chr10:93808200-93842800	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr10:93808400-93815200	Weak transcription	Left Ventricle	heart
34	chr10:93808400-93815800	Weak transcription	Gastric	stomach
35	chr10:93808400-93815800	Weak transcription	Right Ventricle	heart
36	chr10:93808400-93825400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr10:93808400-93834400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr10:93808400-93844400	Weak transcription	Primary T cells from cord blood	blood
39	chr10:93809000-93815800	Weak transcription	Primary hematopoietic stem cells	blood
40	chr10:93810000-93817800	Strong transcription	Liver	Liver
41	chr10:93810400-93812600	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr10:93810800-93812800	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr10:93811000-93813000	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr10:93811200-93812800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr10:93811400-93812800	Strong transcription	Adipose Nuclei	Adipose
46	chr10:93811400-93812800	Strong transcription	Ovary	ovary
47	chr10:93811400-93812800	Strong transcription	Skeletal Muscle Male	skeletal muscle
48	chr10:93811400-93812800	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr10:93811400-93812800	Strong transcription	Stomach Smooth Muscle	stomach
50	chr10:93811600-93812800	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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