Variant report

Variant	rs701847
Chromosome Location	chr10:93873238-93873239
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1034076	0.82[AFR][1000 genomes]
rs11186857	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11186889	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243966	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251149	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251266	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251521	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12259277	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12260687	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12263606	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs1329216	0.82[AFR][1000 genomes]
rs1711841	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1935866	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2026054	0.82[AFR][1000 genomes]
rs2767653	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2771257	1.00[YRI][hapmap]
rs2797641	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2797646	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2798255	0.82[AFR][1000 genomes]
rs6583809	0.82[AFR][1000 genomes]
rs701845	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs833379	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs833381	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs833382	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855700	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855705	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855711	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855712	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855713	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855714	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv895893	chr10:93747260-93875264	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93841200-93881600	Weak transcription	Esophagus	oesophagus
2	chr10:93859200-93901400	Weak transcription	Primary B cells from cord blood	blood
3	chr10:93859400-93874800	Weak transcription	Fetal Intestine Large	intestine
4	chr10:93861000-93873600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:93861400-93879000	Weak transcription	Adipose Nuclei	Adipose
6	chr10:93862000-93874200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:93862000-93881400	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:93862000-93881400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:93862000-93883200	Weak transcription	Fetal Stomach	stomach
10	chr10:93863000-93878600	Weak transcription	Gastric	stomach
11	chr10:93863800-93879200	Weak transcription	GM12878-XiMat	blood
12	chr10:93863800-93881400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr10:93863800-93881600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr10:93867400-93876200	Weak transcription	Brain Germinal Matrix	brain
15	chr10:93867400-93881800	Weak transcription	Stomach Mucosa	stomach
16	chr10:93868000-93901800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr10:93868400-93874200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr10:93869400-93873400	Enhancers	HSMMtube	muscle
19	chr10:93870200-93875000	Enhancers	HepG2	liver
20	chr10:93870200-93878400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr10:93870400-93876400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:93870800-93873400	Weak transcription	Small Intestine	intestine
23	chr10:93870800-93881400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr10:93871000-93881600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr10:93871000-93881800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr10:93871000-93882400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr10:93871000-93882400	Weak transcription	Primary T cells from cord blood	blood
28	chr10:93871000-93887200	Weak transcription	Primary B cells from peripheral blood	blood
29	chr10:93871400-93873400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr10:93871400-93873400	Weak transcription	Right Ventricle	heart
31	chr10:93871400-93874000	Enhancers	Liver	Liver
32	chr10:93871400-93874000	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr10:93871400-93879000	Weak transcription	Brain Substantia Nigra	brain
34	chr10:93871400-93881400	Weak transcription	Brain Anterior Caudate	brain
35	chr10:93871600-93882000	Weak transcription	Brain Hippocampus Middle	brain
36	chr10:93871800-93881400	Weak transcription	Aorta	Aorta
37	chr10:93871800-93881600	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr10:93871800-93884400	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr10:93872200-93873600	Enhancers	Lung	lung
40	chr10:93872400-93873400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr10:93872400-93873600	Enhancers	Ovary	ovary
42	chr10:93872400-93881400	Weak transcription	Left Ventricle	heart
43	chr10:93872600-93873600	Enhancers	Brain Cingulate Gyrus	brain
44	chr10:93872600-93874200	Enhancers	Fetal Heart	heart
45	chr10:93872800-93874000	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr10:93873000-93873400	Weak transcription	Pancreas	Pancrea
47	chr10:93873000-93873400	Weak transcription	Right Atrium	heart
48	chr10:93873000-93878400	Weak transcription	Psoas Muscle	Psoas
49	chr10:93873000-93881400	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr10:93873200-93877400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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