Variant report

Variant	rs855700
Chromosome Location	chr10:93902234-93902235
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93901969..93904436-chr10:93913045..93915789,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1034076	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs11186857	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11186889	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251149	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251266	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251521	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12259277	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12260687	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12263606	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs1329216	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs1711841	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1935866	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2026054	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs2265196	1.00[YRI][hapmap]
rs2767653	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2771257	1.00[YRI][hapmap]
rs2797641	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2797646	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2798255	0.85[AFR][1000 genomes]
rs6583809	0.85[AFR][1000 genomes]
rs701845	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs701847	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs833379	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs833381	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs833382	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855705	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855712	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855714	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93885400-93902400	Weak transcription	Brain Substantia Nigra	brain
2	chr10:93885400-93906400	Weak transcription	Aorta	Aorta
3	chr10:93885400-93906600	Weak transcription	Spleen	Spleen
4	chr10:93885400-93908400	Weak transcription	Lung	lung
5	chr10:93885800-93905600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:93886200-93906000	Weak transcription	Esophagus	oesophagus
7	chr10:93886200-93906400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr10:93886200-93906600	Weak transcription	Right Ventricle	heart
9	chr10:93886200-93907800	Weak transcription	Psoas Muscle	Psoas
10	chr10:93886200-93910800	Weak transcription	Pancreas	Pancrea
11	chr10:93886200-93911600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr10:93891400-93902400	Weak transcription	HepG2	liver
13	chr10:93891400-93906600	Weak transcription	Liver	Liver
14	chr10:93892600-93911000	Weak transcription	Fetal Heart	heart
15	chr10:93895000-93909000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr10:93895400-93906800	Weak transcription	Brain Germinal Matrix	brain
17	chr10:93895600-93902600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:93896400-93902400	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr10:93896800-93903800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:93897000-93904000	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr10:93897200-93904200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr10:93897400-93906200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr10:93897600-93905600	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr10:93898000-93905400	Weak transcription	Adipose Nuclei	Adipose
25	chr10:93898200-93906600	Weak transcription	Gastric	stomach
26	chr10:93898200-93926200	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr10:93901400-93902800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr10:93901600-93903000	Enhancers	Primary hematopoietic stem cells	blood
29	chr10:93901800-93902400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:93901800-93902400	Flanking Active TSS	HUVEC	blood vessel
31	chr10:93901800-93902600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:93901800-93902800	Enhancers	Hela-S3	cervix
33	chr10:93901800-93903000	Flanking Active TSS	Primary B cells from cord blood	blood
34	chr10:93901800-93903600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr10:93901800-93903600	Enhancers	Muscle Satellite Cultured Cells	--
36	chr10:93902000-93902400	Enhancers	NHLF	lung
37	chr10:93902000-93902600	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr10:93902000-93902800	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr10:93902000-93903000	Enhancers	Colon Smooth Muscle	Colon
40	chr10:93902000-93903200	Flanking Active TSS	GM12878-XiMat	blood
41	chr10:93902000-93903400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
42	chr10:93902000-93903600	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr10:93902000-93903600	Enhancers	Osteobl	bone
44	chr10:93902200-93902400	Enhancers	Brain Angular Gyrus	brain
45	chr10:93902200-93902400	Genic enhancers	Brain Anterior Caudate	brain
46	chr10:93902200-93902400	Enhancers	Brain Cingulate Gyrus	brain
47	chr10:93902200-93902400	Enhancers	Pancreatic Islets	Pancreatic Islet
48	chr10:93902200-93902600	Enhancers	Duodenum Smooth Muscle	Duodenum
49	chr10:93902200-93902800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr10:93902200-93902800	Strong transcription	Left Ventricle	heart

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