Variant report

Variant	rs701845
Chromosome Location	chr10:93857416-93857417
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1034076	0.85[AFR][1000 genomes]
rs11186857	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11186889	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251149	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251266	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251521	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12259277	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12260687	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12263606	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs1329216	0.85[AFR][1000 genomes]
rs1711841	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1890897	1.00[YRI][hapmap]
rs1935866	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2026054	0.85[AFR][1000 genomes]
rs2767653	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2797641	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2797646	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2798255	0.85[AFR][1000 genomes]
rs6583809	0.85[AFR][1000 genomes]
rs701847	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs833379	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs833381	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs833382	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855700	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855705	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855712	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855714	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv895893	chr10:93747260-93875264	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93841200-93872400	Weak transcription	Spleen	Spleen
2	chr10:93841200-93881600	Weak transcription	Esophagus	oesophagus
3	chr10:93844000-93860800	Weak transcription	Psoas Muscle	Psoas
4	chr10:93847800-93861000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:93848200-93860800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:93851800-93860800	Weak transcription	Brain Anterior Caudate	brain
7	chr10:93852000-93860800	Weak transcription	Brain Hippocampus Middle	brain
8	chr10:93853400-93858000	Weak transcription	GM12878-XiMat	blood
9	chr10:93855000-93860600	Weak transcription	Fetal Heart	heart
10	chr10:93855200-93860800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr10:93855200-93860800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr10:93856800-93860800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr10:93857000-93857600	Weak transcription	Left Ventricle	heart
14	chr10:93857000-93857600	Enhancers	Placenta Amnion	Placenta Amnion
15	chr10:93857200-93860600	Weak transcription	K562	blood
16	chr10:93857200-93860800	Weak transcription	Liver	Liver
17	chr10:93857200-93861000	Weak transcription	Right Atrium	heart
18	chr10:93857400-93860600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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