Variant report

Variant	rs855705
Chromosome Location	chr10:93881771-93881772
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93877142..93879696-chr10:93881033..93883105,2	MCF-7	breast:
2	chr10:93881358..93883169-chr10:93884864..93886864,2	K562	blood:

Variant related genes	Relation type
ENSG00000214549	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1034076	0.85[AFR][1000 genomes]
rs11186857	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11186889	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251149	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251266	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251521	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12259277	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12260687	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12263606	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs1329216	0.85[AFR][1000 genomes]
rs1711841	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1935866	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2026054	0.85[AFR][1000 genomes]
rs2767653	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2771257	1.00[YRI][hapmap]
rs2797641	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2797646	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2798255	0.85[AFR][1000 genomes]
rs6583809	0.85[AFR][1000 genomes]
rs701845	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs701847	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs833379	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs833381	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs833382	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855700	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855712	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855714	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93859200-93901400	Weak transcription	Primary B cells from cord blood	blood
2	chr10:93862000-93883200	Weak transcription	Fetal Stomach	stomach
3	chr10:93867400-93881800	Weak transcription	Stomach Mucosa	stomach
4	chr10:93868000-93901800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:93871000-93881800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:93871000-93882400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:93871000-93882400	Weak transcription	Primary T cells from cord blood	blood
8	chr10:93871000-93887200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr10:93871600-93882000	Weak transcription	Brain Hippocampus Middle	brain
10	chr10:93871800-93884400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr10:93873600-93882000	Weak transcription	Lung	lung
12	chr10:93873600-93883000	Weak transcription	Right Atrium	heart
13	chr10:93874000-93883000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr10:93874000-93885000	Weak transcription	Small Intestine	intestine
15	chr10:93874400-93882800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr10:93874600-93883000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr10:93874600-93899600	Weak transcription	Duodenum Mucosa	Duodenum
18	chr10:93875000-93882600	Weak transcription	Fetal Intestine Large	intestine
19	chr10:93875000-93883800	Weak transcription	Fetal Intestine Small	intestine
20	chr10:93878200-93885000	Enhancers	Liver	Liver
21	chr10:93878800-93881800	Weak transcription	Brain Angular Gyrus	brain
22	chr10:93879400-93882000	Weak transcription	Adipose Nuclei	Adipose
23	chr10:93881400-93882200	Enhancers	Left Ventricle	heart
24	chr10:93881400-93882200	Enhancers	Pancreas	Pancrea
25	chr10:93881400-93882400	Enhancers	Right Ventricle	heart
26	chr10:93881400-93885400	Enhancers	Aorta	Aorta
27	chr10:93881400-93885400	Enhancers	Brain Cingulate Gyrus	brain
28	chr10:93881400-93885400	Enhancers	Ovary	ovary
29	chr10:93881400-93885400	Enhancers	Rectal Smooth Muscle	rectum
30	chr10:93881400-93886200	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr10:93881400-93886200	Enhancers	Brain Anterior Caudate	brain
32	chr10:93881400-93886200	Enhancers	Colon Smooth Muscle	Colon
33	chr10:93881400-93886200	Enhancers	Psoas Muscle	Psoas
34	chr10:93881400-93886200	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr10:93881400-93886200	Enhancers	Stomach Smooth Muscle	stomach
36	chr10:93881400-93886400	Enhancers	Fetal Heart	heart
37	chr10:93881400-93886400	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr10:93881600-93882200	Enhancers	Esophagus	oesophagus
39	chr10:93881600-93882200	Enhancers	Gastric	stomach
40	chr10:93881600-93882400	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr10:93881600-93883400	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr10:93881600-93884200	Enhancers	Hela-S3	cervix
43	chr10:93881600-93884800	Flanking Active TSS	HepG2	liver
44	chr10:93881600-93885400	Enhancers	Brain Substantia Nigra	brain
45	chr10:93881600-93885800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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