Variant report

Variant	rs2767653
Chromosome Location	chr10:93912953-93912954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1034076	1.00[LWK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs11186857	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11186889	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251149	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251266	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251521	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12259277	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12260687	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12263606	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs1329216	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs1711841	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1935866	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2026054	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs2265196	1.00[YRI][hapmap]
rs2771257	1.00[YRI][hapmap]
rs2797641	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2797646	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2798255	0.85[AFR][1000 genomes]
rs6583809	0.85[AFR][1000 genomes]
rs701845	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs701847	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs833379	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs833381	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs833382	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855700	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855705	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855712	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855714	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93898200-93926200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr10:93903000-93925600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr10:93905400-93916800	Weak transcription	Right Atrium	heart
4	chr10:93906200-93925600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr10:93906800-93925600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr10:93906800-93926600	Weak transcription	Aorta	Aorta
7	chr10:93908000-93915800	Weak transcription	Right Ventricle	heart
8	chr10:93908200-93915800	Weak transcription	Fetal Lung	lung
9	chr10:93908600-93926400	Weak transcription	Brain Anterior Caudate	brain
10	chr10:93911600-93917200	Weak transcription	Brain Substantia Nigra	brain
11	chr10:93911800-93915200	Weak transcription	Brain Angular Gyrus	brain
12	chr10:93911800-93926200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:93911800-93926600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr10:93911800-93926600	Weak transcription	Left Ventricle	heart
15	chr10:93911800-93953200	Weak transcription	Pancreas	Pancrea
16	chr10:93912000-93915800	Weak transcription	Brain Hippocampus Middle	brain
17	chr10:93912000-93915800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:93912000-93915800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr10:93912000-93915800	Weak transcription	Ovary	ovary
20	chr10:93912000-93916000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr10:93912800-93913000	Enhancers	Psoas Muscle	Psoas

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