Variant report

Variant	rs2796191
Chromosome Location	chr1:71698612-71698613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2567416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2639342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2744910	1.00[AMR][1000 genomes]
rs2744917	1.00[AMR][1000 genomes]
rs2796193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2796194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2796205	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2817856	1.00[AMR][1000 genomes]
rs2817859	1.00[AMR][1000 genomes]
rs2817861	1.00[AMR][1000 genomes]
rs2817862	1.00[AMR][1000 genomes]
rs2817863	1.00[AMR][1000 genomes]
rs4146734	1.00[AMR][1000 genomes]
rs5689	1.00[AMR][1000 genomes]
rs6424416	1.00[AMR][1000 genomes]
rs6424417	1.00[AMR][1000 genomes]
rs9425056	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949599	chr1:71655652-72327802	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71695200-71700800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr1:71696800-71698800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:71697400-71699000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:71698000-71700400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:71698000-71700600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr1:71698200-71699800	Enhancers	Ovary	ovary
7	chr1:71698200-71700400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr1:71698400-71698800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:71698400-71699200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:71698400-71699400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr1:71698600-71699200	Weak transcription	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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