Variant report

Variant	rs9425056
Chromosome Location	chr1:71549158-71549159
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:71545618..71549519-chr1:71556645..71559199,4	K562	blood:

Variant related genes	Relation type
ENSG00000229956	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17090676	1.00[AMR][1000 genomes]
rs2567416	1.00[AMR][1000 genomes]
rs2639342	1.00[AMR][1000 genomes]
rs2744910	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2744912	1.00[AMR][1000 genomes]
rs2744913	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2744917	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2796191	1.00[AMR][1000 genomes]
rs2796193	1.00[AMR][1000 genomes]
rs2796194	1.00[AMR][1000 genomes]
rs2796205	1.00[AMR][1000 genomes]
rs2817856	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2817859	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2817861	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2817862	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2817863	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4146734	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5689	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6424416	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6424417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6661368	1.00[AMR][1000 genomes]
rs6667630	1.00[AMR][1000 genomes]
rs7539573	1.00[AMR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71546800-71551000	Weak transcription	Spleen	Spleen
2	chr1:71547600-71549400	Enhancers	Brain Cingulate Gyrus	brain
3	chr1:71547600-71549600	Enhancers	Brain Hippocampus Middle	brain
4	chr1:71547600-71551000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:71547600-71551400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr1:71547600-71551600	Weak transcription	HSMMtube	muscle
7	chr1:71547600-71551600	Weak transcription	NHDF-Ad	bronchial
8	chr1:71547600-71551800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:71547600-71555200	Weak transcription	Lung	lung
10	chr1:71547600-71555800	Weak transcription	NHLF	lung
11	chr1:71547800-71549600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:71547800-71550800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:71547800-71551200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr1:71547800-71551400	Weak transcription	NHEK	skin
15	chr1:71547800-71551600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:71547800-71551600	Weak transcription	Fetal Intestine Small	intestine
17	chr1:71547800-71551600	Weak transcription	HSMM	muscle
18	chr1:71547800-71551800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:71547800-71551800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr1:71547800-71551800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr1:71547800-71554600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr1:71548600-71549200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr1:71548600-71549400	Enhancers	Brain Anterior Caudate	brain
24	chr1:71549000-71549200	Enhancers	Brain Inferior Temporal Lobe	brain

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