Variant report

Variant	rs2796194
Chromosome Location	chr1:71706540-71706541
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2567416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2639342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2744910	1.00[AMR][1000 genomes]
rs2744917	1.00[AMR][1000 genomes]
rs2796191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2796193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2796205	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2817859	1.00[AMR][1000 genomes]
rs2817861	1.00[AMR][1000 genomes]
rs2817862	1.00[AMR][1000 genomes]
rs2817863	1.00[AMR][1000 genomes]
rs4146734	1.00[AMR][1000 genomes]
rs6424416	1.00[AMR][1000 genomes]
rs6424417	1.00[AMR][1000 genomes]
rs9425056	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949599	chr1:71655652-72327802	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1005726	chr1:71701840-71953242	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71705200-71706800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:71706200-71706600	Enhancers	NHDF-Ad	bronchial
3	chr1:71706200-71707000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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