The 2.0 version of rSNPBase

Variant report

Variant rs6424416
Chromosome Location chr1:71555800-71555801
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:31 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:71547600-71555800 Weak transcription NHLF lung
2 chr1:71552600-71556000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
3 chr1:71554600-71556600 Enhancers NHDF-Ad bronchial
4 chr1:71554800-71555800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
5 chr1:71555000-71555800 Enhancers Stomach Smooth Muscle stomach
6 chr1:71555000-71556200 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
7 chr1:71555000-71556200 Enhancers Ovary ovary
8 chr1:71555000-71556400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
9 chr1:71555000-71556600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
10 chr1:71555000-71556600 Enhancers Placenta Amnion Placenta Amnion
11 chr1:71555200-71555800 Enhancers Osteobl bone
12 chr1:71555200-71556000 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr1:71555200-71556400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
14 chr1:71555200-71556400 Enhancers NH-A brain
15 chr1:71555200-71556600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
16 chr1:71555400-71556000 Enhancers Colon Smooth Muscle Colon
17 chr1:71555400-71556200 Flanking Active TSS Muscle Satellite Cultured Cells --
18 chr1:71555400-71556200 Enhancers HMEC breast
19 chr1:71555400-71556200 Enhancers NHEK skin
20 chr1:71555400-71556400 Enhancers Rectal Mucosa Donor 29 rectum
21 chr1:71555600-71555800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
22 chr1:71555600-71555800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
23 chr1:71555600-71556200 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
24 chr1:71555600-71556200 Enhancers HSMM muscle
25 chr1:71555600-71556400 Enhancers HSMMtube muscle
26 chr1:71555600-71560400 Weak transcription Rectal Mucosa Donor 31 rectum
27 chr1:71555800-71556000 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
28 chr1:71555800-71556200 Flanking Active TSS IMR90 fetal lung fibroblasts Cell Line lung
29 chr1:71555800-71556200 Flanking Active TSS Osteobl bone
30 chr1:71555800-71556400 Enhancers NHLF lung
31 chr1:71555800-71556600 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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Last update: Aug 31, 2015