Variant report

Variant	rs2818772
Chromosome Location	chr1:217164359-217164360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1030845	0.83[CEU][hapmap]
rs1030854	0.83[CEU][hapmap]
rs10492959	0.83[CEU][hapmap]
rs10863284	0.80[CEU][hapmap]
rs1339221	0.90[CHB][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs1832523	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1890551	0.94[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap]
rs1890552	0.94[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap]
rs1960901	0.83[CEU][hapmap]
rs2576196	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2576197	0.88[CEU][hapmap]
rs2576199	0.89[CEU][hapmap]
rs2576200	0.88[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs2576201	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2576208	0.94[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.99[ASN][1000 genomes]
rs2576226	0.88[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs2576271	0.89[CEU][hapmap]
rs2789557	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2789558	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2789560	0.94[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2789572	0.99[ASN][1000 genomes]
rs2818754	0.88[CEU][hapmap]
rs2818755	0.89[CEU][hapmap]
rs2818757	0.89[CEU][hapmap]
rs2818758	0.83[CEU][hapmap]
rs2818765	0.83[CEU][hapmap];0.92[EUR][1000 genomes]
rs2818768	0.94[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2818769	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2818773	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2818798	0.90[ASN][1000 genomes]
rs2818801	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs3000609	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3122530	0.88[CEU][hapmap]
rs893127	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468149	chr1:217134966-217203091	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv549204	chr1:217134966-217203091	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv428610	chr1:217143317-217307243	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1008670	chr1:217155114-217206765	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1012243	chr1:217157000-217206765	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1006155	chr1:217157000-217215465	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv1004880	chr1:217157748-217206765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv947381	chr1:217161792-217165732	Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1011212	chr1:217162443-217206765	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217157400-217194400	Weak transcription	Fetal Muscle Leg	muscle
2	chr1:217161200-217170600	Weak transcription	Pancreas	Pancrea

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