Variant report

Variant	rs2576200
Chromosome Location	chr1:217128614-217128615
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1030845	0.94[CEU][hapmap]
rs1030854	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs1030855	0.87[EUR][1000 genomes]
rs10492959	0.94[CEU][hapmap];0.88[GIH][hapmap];0.83[MEX][hapmap];0.87[EUR][1000 genomes]
rs10863284	0.93[CEU][hapmap]
rs11117734	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs11117736	0.87[EUR][1000 genomes]
rs11117739	0.92[EUR][1000 genomes]
rs11117740	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs11117741	0.88[CEU][hapmap];0.93[EUR][1000 genomes]
rs1832523	0.94[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs1890551	0.94[CEU][hapmap];0.82[CHB][hapmap]
rs1890552	0.94[CEU][hapmap];0.86[CHB][hapmap]
rs1960901	0.94[CEU][hapmap]
rs2576196	0.86[ASW][hapmap];0.94[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.92[GIH][hapmap];0.85[JPT][hapmap];0.91[LWK][hapmap];0.87[MKK][hapmap];0.81[TSI][hapmap];0.84[YRI][hapmap]
rs2576197	1.00[CEU][hapmap];0.82[GIH][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes]
rs2576199	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2576201	0.94[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs2576208	0.94[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2576226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2576227	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs2576228	0.92[EUR][1000 genomes]
rs2576229	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs2576230	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs2576271	1.00[CEU][hapmap]
rs2789550	0.87[YRI][hapmap]
rs2789557	0.86[ASW][hapmap];0.94[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.91[LWK][hapmap];0.87[MKK][hapmap];0.81[TSI][hapmap];0.80[YRI][hapmap];0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2789558	0.86[ASW][hapmap];0.94[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.91[LWK][hapmap];0.87[MKK][hapmap];0.81[TSI][hapmap];0.80[YRI][hapmap];0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2789560	0.94[CEU][hapmap];0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs2789572	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2818754	1.00[CEU][hapmap]
rs2818755	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2818757	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2818758	0.94[CEU][hapmap];0.88[GIH][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2818765	0.83[CEU][hapmap];0.90[GIH][hapmap]
rs2818768	0.94[CEU][hapmap];0.82[CHB][hapmap]
rs2818769	0.94[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2818772	0.88[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs2818773	0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2818789	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs2818790	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs2818791	0.88[CEU][hapmap];0.93[EUR][1000 genomes]
rs2818792	0.92[EUR][1000 genomes]
rs2818793	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs2818794	0.92[EUR][1000 genomes]
rs2818795	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs2818797	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs2818798	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2818799	0.87[CEU][hapmap];0.95[GIH][hapmap];0.92[EUR][1000 genomes]
rs2818800	0.92[EUR][1000 genomes]
rs2818801	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.87[JPT][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3000609	0.86[ASW][hapmap];0.94[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];0.91[LWK][hapmap];0.87[MKK][hapmap];0.81[TSI][hapmap];0.80[YRI][hapmap];0.86[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3098286	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs3098287	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs3122530	1.00[CEU][hapmap];0.87[GIH][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes]
rs893127	0.94[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2576200	TMEM206	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217122400-217146200	Weak transcription	Pancreas	Pancrea
2	chr1:217125200-217135400	Weak transcription	Fetal Heart	heart
3	chr1:217127000-217130200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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