Variant report

Variant	rs2818755
Chromosome Location	chr1:217120886-217120887
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:217112630..217115574-chr1:217119610..217121400,2	K562	blood:

Variant related genes	Relation type
ENSG00000196482	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1030845	0.94[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.96[ASN][1000 genomes]
rs1030854	0.94[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs1030855	0.87[EUR][1000 genomes]
rs10492959	0.94[CEU][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs10863284	0.93[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs11117734	0.89[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11117736	0.87[EUR][1000 genomes]
rs11117739	0.81[EUR][1000 genomes]
rs11117740	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs11117741	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs1832523	0.94[CEU][hapmap]
rs1890551	0.94[CEU][hapmap];0.87[YRI][hapmap]
rs1890552	0.94[CEU][hapmap];0.85[YRI][hapmap]
rs1960901	0.94[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.96[ASN][1000 genomes]
rs2377265	0.96[ASN][1000 genomes]
rs2576196	0.94[CEU][hapmap]
rs2576197	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2576199	1.00[CEU][hapmap];0.82[JPT][hapmap];0.88[YRI][hapmap];0.97[EUR][1000 genomes]
rs2576200	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2576201	0.94[CEU][hapmap]
rs2576208	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs2576226	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2576227	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs2576228	0.81[EUR][1000 genomes]
rs2576229	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs2576230	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs2576271	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.96[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2789557	0.94[CEU][hapmap]
rs2789558	0.94[CEU][hapmap]
rs2789560	0.94[CEU][hapmap]
rs2789572	0.90[EUR][1000 genomes]
rs2818754	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2818757	1.00[CEU][hapmap];0.95[JPT][hapmap];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2818758	0.94[CEU][hapmap];0.81[JPT][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2818765	0.83[CEU][hapmap]
rs2818768	0.94[CEU][hapmap]
rs2818769	0.94[CEU][hapmap]
rs2818772	0.89[CEU][hapmap]
rs2818789	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs2818790	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs2818791	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs2818792	0.81[EUR][1000 genomes]
rs2818793	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs2818794	0.81[EUR][1000 genomes]
rs2818795	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs2818797	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs2818798	0.90[EUR][1000 genomes]
rs2818799	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs2818800	0.81[EUR][1000 genomes]
rs2818801	1.00[CEU][hapmap];0.93[YRI][hapmap];0.89[EUR][1000 genomes]
rs3000609	0.94[CEU][hapmap]
rs3098286	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs3098287	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs3122530	1.00[CEU][hapmap];0.85[YRI][hapmap];0.96[EUR][1000 genomes]
rs893127	0.94[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.96[ASN][1000 genomes]
rs994921	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3445404	chr1:217120745-217121066	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217111000-217125400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:217117800-217121200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr1:217118800-217125400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:217119600-217125400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr1:217119600-217125400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr1:217119800-217121000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr1:217119800-217126000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr1:217120400-217126200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr1:217120800-217121000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:217120800-217121200	Enhancers	HUES48 Cell Line	embryonic stem cell

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