Variant report

Variant	rs1960901
Chromosome Location	chr1:217115627-217115628
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1030845	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.96[TSI][hapmap];0.87[YRI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1030854	1.00[CEU][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1030855	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10492959	1.00[CEU][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10863284	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11117734	0.94[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11117736	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11117740	0.94[CEU][hapmap]
rs11117741	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1832523	0.88[CEU][hapmap]
rs1890551	0.88[CEU][hapmap]
rs1890552	0.88[CEU][hapmap]
rs2377265	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2576196	0.88[CEU][hapmap]
rs2576197	0.94[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];0.81[JPT][hapmap];0.93[ASN][1000 genomes]
rs2576199	0.94[CEU][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs2576200	0.94[CEU][hapmap]
rs2576201	0.88[CEU][hapmap]
rs2576208	0.87[CEU][hapmap]
rs2576226	0.94[CEU][hapmap]
rs2576227	0.94[CEU][hapmap]
rs2576229	0.94[CEU][hapmap]
rs2576230	0.94[CEU][hapmap]
rs2576271	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[ASN][1000 genomes]
rs2789557	0.88[CEU][hapmap]
rs2789558	0.88[CEU][hapmap]
rs2789560	0.88[CEU][hapmap]
rs2818754	0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2818755	0.94[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.96[ASN][1000 genomes]
rs2818757	0.94[CEU][hapmap]
rs2818758	0.88[CEU][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs2818765	0.89[CEU][hapmap]
rs2818768	0.88[CEU][hapmap]
rs2818769	0.88[CEU][hapmap]
rs2818772	0.83[CEU][hapmap]
rs2818789	0.94[CEU][hapmap]
rs2818790	0.94[CEU][hapmap]
rs2818791	0.94[CEU][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2818793	0.94[CEU][hapmap]
rs2818795	0.94[CEU][hapmap]
rs2818797	0.94[CEU][hapmap]
rs2818799	0.94[CEU][hapmap]
rs2818801	0.94[CEU][hapmap]
rs3000609	0.88[CEU][hapmap]
rs3098286	0.94[CEU][hapmap]
rs3098287	0.94[CEU][hapmap]
rs3122530	0.94[CEU][hapmap];0.82[GIH][hapmap]
rs893127	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs994921	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1960901	TMEM206	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217111000-217125400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:217111200-217118000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:217112000-217117600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr1:217112200-217117800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:217112400-217117800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:217113000-217117000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr1:217113800-217117600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr1:217114000-217117600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr1:217114400-217117000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr1:217114400-217117800	Weak transcription	H1 Cell Line	embryonic stem cell

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