Variant report

Variant	rs10492959
Chromosome Location	chr1:217123940-217123941
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1030845	1.00[CEU][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1030854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1030855	0.86[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10863284	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11117734	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11117736	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11117739	0.93[EUR][1000 genomes]
rs11117740	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs11117741	0.94[CEU][hapmap];0.92[EUR][1000 genomes]
rs12562202	0.85[JPT][hapmap]
rs1832523	0.88[CEU][hapmap]
rs1890551	0.88[CEU][hapmap]
rs1890552	0.88[CEU][hapmap]
rs1960901	1.00[CEU][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2377265	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2576196	0.88[CEU][hapmap];0.80[GIH][hapmap]
rs2576197	0.94[CEU][hapmap];0.95[GIH][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2576199	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2576200	0.94[CEU][hapmap];0.88[GIH][hapmap];0.83[MEX][hapmap];0.87[EUR][1000 genomes]
rs2576201	0.88[CEU][hapmap]
rs2576208	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs2576226	0.94[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2576227	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs2576228	0.93[EUR][1000 genomes]
rs2576229	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs2576230	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs2576271	0.94[CEU][hapmap]
rs2789557	0.88[CEU][hapmap];0.80[GIH][hapmap]
rs2789558	0.88[CEU][hapmap];0.80[GIH][hapmap]
rs2789560	0.88[CEU][hapmap]
rs2789572	0.85[EUR][1000 genomes]
rs2818754	0.94[CEU][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs2818755	0.94[CEU][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs2818757	0.94[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2818758	0.88[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2818765	0.89[CEU][hapmap]
rs2818768	0.88[CEU][hapmap]
rs2818769	0.88[CEU][hapmap]
rs2818772	0.83[CEU][hapmap]
rs2818789	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs2818790	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs2818791	0.94[CEU][hapmap];0.92[EUR][1000 genomes]
rs2818792	0.93[EUR][1000 genomes]
rs2818793	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs2818794	0.93[EUR][1000 genomes]
rs2818795	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs2818797	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs2818798	0.85[EUR][1000 genomes]
rs2818799	0.94[CEU][hapmap];0.82[GIH][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes]
rs2818800	0.93[EUR][1000 genomes]
rs2818801	0.94[CEU][hapmap];0.85[GIH][hapmap];0.86[EUR][1000 genomes]
rs3000609	0.88[CEU][hapmap]
rs3098286	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs3098287	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs3122530	0.94[CEU][hapmap];0.95[GIH][hapmap];0.89[EUR][1000 genomes]
rs893127	1.00[CEU][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs994921	0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10492959	TMEM206	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217111000-217125400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:217118800-217125400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:217119600-217125400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr1:217119600-217125400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr1:217119800-217126000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr1:217120400-217126200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:217121200-217125400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr1:217121400-217125600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr1:217122400-217146200	Weak transcription	Pancreas	Pancrea
10	chr1:217123200-217124600	Weak transcription	Fetal Heart	heart

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