Variant report

Variant	rs2377265
Chromosome Location	chr1:217115896-217115897
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1030845	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1030854	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1030855	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10492959	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10863284	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11117734	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11117736	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11117739	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11117740	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1960901	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2576197	0.93[ASN][1000 genomes]
rs2576199	0.83[ASN][1000 genomes]
rs2576227	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2576228	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2576229	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2576230	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2576271	0.95[ASN][1000 genomes]
rs2818754	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2818755	0.96[ASN][1000 genomes]
rs2818758	0.83[ASN][1000 genomes]
rs2818789	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2818790	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2818792	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2818793	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2818794	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2818795	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2818797	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2818799	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2818800	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3098286	0.80[EUR][1000 genomes]
rs3098287	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs893127	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs994921	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217111000-217125400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:217111200-217118000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:217112000-217117600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr1:217112200-217117800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:217112400-217117800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:217113000-217117000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr1:217113800-217117600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr1:217114000-217117600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr1:217114400-217117000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr1:217114400-217117800	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links