Variant report

Variant	rs28376193
Chromosome Location	chr17:63229782-63229783
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs190960	1.00[EUR][1000 genomes]
rs28669831	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28696681	1.00[EUR][1000 genomes]
rs28718547	0.91[AFR][1000 genomes]
rs28852789	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs299833	1.00[EUR][1000 genomes]
rs299836	1.00[EUR][1000 genomes]
rs4129025	1.00[EUR][1000 genomes]
rs59911976	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8067101	1.00[EUR][1000 genomes]
rs8072705	1.00[EUR][1000 genomes]
rs9889760	1.00[EUR][1000 genomes]
rs9891825	1.00[EUR][1000 genomes]
rs9892174	1.00[EUR][1000 genomes]
rs9903465	1.00[EUR][1000 genomes]
rs9907340	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9915448	1.00[EUR][1000 genomes]
rs9915947	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63225400-63231600	Weak transcription	Osteobl	bone
2	chr17:63228400-63230600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr17:63228400-63232400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr17:63229400-63229800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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