Variant report

Variant	rs28696681
Chromosome Location	chr17:63173738-63173739
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:63173089..63175684-chr17:63187453..63189983,2	MCF-7	breast:
2	chr17:63166945..63171394-chr17:63172281..63178092,5	K562	blood:
3	chr17:63167995..63174174-chr17:63174484..63177820,5	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs190960	1.00[EUR][1000 genomes]
rs28376193	1.00[EUR][1000 genomes]
rs28669831	1.00[EUR][1000 genomes]
rs28852789	1.00[EUR][1000 genomes]
rs299833	1.00[EUR][1000 genomes]
rs299836	1.00[EUR][1000 genomes]
rs4129025	1.00[EUR][1000 genomes]
rs59911976	1.00[EUR][1000 genomes]
rs8067101	1.00[EUR][1000 genomes]
rs8072705	1.00[EUR][1000 genomes]
rs9889760	1.00[EUR][1000 genomes]
rs9891825	1.00[EUR][1000 genomes]
rs9892174	1.00[EUR][1000 genomes]
rs9903465	1.00[EUR][1000 genomes]
rs9907340	1.00[EUR][1000 genomes]
rs9915448	1.00[EUR][1000 genomes]
rs9915947	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63141000-63175200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr17:63153600-63175400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr17:63157000-63179800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr17:63160000-63180400	Weak transcription	Brain Substantia Nigra	brain
5	chr17:63167400-63175200	Weak transcription	Brain Germinal Matrix	brain
6	chr17:63167600-63175000	Weak transcription	Brain Angular Gyrus	brain
7	chr17:63167800-63175000	Weak transcription	Fetal Brain Female	brain
8	chr17:63169800-63190800	Weak transcription	Gastric	stomach
9	chr17:63170000-63173800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr17:63170000-63175000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr17:63170000-63175200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr17:63170000-63177600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr17:63170000-63178400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr17:63170000-63180200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr17:63170200-63173800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr17:63170200-63174200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr17:63170200-63174600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr17:63170200-63175000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr17:63170200-63175200	Weak transcription	Fetal Stomach	stomach
20	chr17:63170200-63175600	Enhancers	GM12878-XiMat	blood
21	chr17:63170400-63175200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr17:63170600-63173800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr17:63170600-63175200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr17:63170600-63175200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr17:63170600-63175200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr17:63170600-63177600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr17:63170800-63175000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr17:63170800-63175000	Weak transcription	Brain Anterior Caudate	brain
29	chr17:63170800-63175200	Weak transcription	Thymus	Thymus
30	chr17:63170800-63175600	Weak transcription	Primary T cells from cord blood	blood
31	chr17:63170800-63177400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr17:63171000-63175600	Weak transcription	Fetal Kidney	kidney
33	chr17:63171200-63175200	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr17:63171400-63175000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr17:63171400-63175000	Weak transcription	Fetal Brain Male	brain
36	chr17:63171400-63175200	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr17:63171600-63175000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr17:63171600-63175800	Weak transcription	Spleen	Spleen
39	chr17:63172200-63173800	Weak transcription	Fetal Thymus	thymus
40	chr17:63172200-63176000	Weak transcription	Rectal Smooth Muscle	rectum
41	chr17:63172400-63174800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr17:63172600-63175000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr17:63172600-63175000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr17:63172800-63175000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr17:63173000-63175400	Enhancers	Dnd41	blood
46	chr17:63173000-63179800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr17:63173200-63175000	Weak transcription	Stomach Smooth Muscle	stomach
48	chr17:63173400-63179800	Weak transcription	Aorta	Aorta
49	chr17:63173600-63173800	Enhancers	Primary T cells fromperipheralblood	blood
50	chr17:63173600-63176000	Enhancers	HUVEC	blood vessel

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