Variant report

Variant	rs9903465
Chromosome Location	chr17:63264741-63264742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs190960	1.00[EUR][1000 genomes]
rs28376193	1.00[EUR][1000 genomes]
rs28669831	1.00[EUR][1000 genomes]
rs28696681	1.00[EUR][1000 genomes]
rs28852789	1.00[EUR][1000 genomes]
rs299833	1.00[EUR][1000 genomes]
rs299836	1.00[EUR][1000 genomes]
rs4129025	1.00[EUR][1000 genomes]
rs56781810	0.97[AFR][1000 genomes]
rs59911976	1.00[EUR][1000 genomes]
rs8067101	1.00[EUR][1000 genomes]
rs8072705	1.00[EUR][1000 genomes]
rs9889760	1.00[EUR][1000 genomes]
rs9890163	1.00[TSI][hapmap]
rs9891825	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9892174	1.00[EUR][1000 genomes]
rs9907340	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9915448	1.00[EUR][1000 genomes]
rs9915947	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63262400-63264800	Weak transcription	HUVEC	blood vessel
2	chr17:63264400-63265800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr17:63264600-63265600	Enhancers	NHDF-Ad	bronchial
4	chr17:63264600-63266000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr17:63264600-63266000	Enhancers	Osteobl	bone
6	chr17:63264600-63267800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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