Variant report

Variant	rs4129025
Chromosome Location	chr17:63161391-63161392
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:63151108..63154306-chr17:63159891..63162115,3	MCF-7	breast:
2	chr17:63160128..63162121-chr17:63168023..63170188,2	K562	blood:
3	chr17:63146853..63148848-chr17:63160365..63162222,2	K562	blood:
4	chr17:63159589..63162697-chr17:63164587..63167490,3	K562	blood:
5	chr17:63160915..63162697-chr17:63164996..63166925,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs190960	1.00[EUR][1000 genomes]
rs28376193	1.00[EUR][1000 genomes]
rs28669831	1.00[EUR][1000 genomes]
rs28696681	1.00[EUR][1000 genomes]
rs28852789	1.00[EUR][1000 genomes]
rs299833	1.00[EUR][1000 genomes]
rs299836	1.00[EUR][1000 genomes]
rs59911976	1.00[EUR][1000 genomes]
rs8067101	1.00[EUR][1000 genomes]
rs8072705	1.00[EUR][1000 genomes]
rs9889760	1.00[EUR][1000 genomes]
rs9891825	1.00[EUR][1000 genomes]
rs9892174	1.00[EUR][1000 genomes]
rs9903465	1.00[EUR][1000 genomes]
rs9907340	1.00[EUR][1000 genomes]
rs9915448	1.00[EUR][1000 genomes]
rs9915947	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63134400-63169000	Weak transcription	Colon Smooth Muscle	Colon
2	chr17:63141000-63175200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr17:63143600-63169400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr17:63145800-63167000	Weak transcription	Aorta	Aorta
5	chr17:63150200-63162800	Weak transcription	Fetal Stomach	stomach
6	chr17:63153600-63175400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr17:63156000-63164400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr17:63156600-63165600	Weak transcription	Dnd41	blood
9	chr17:63157000-63179800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr17:63157200-63169600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr17:63159600-63161600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr17:63159600-63162000	Enhancers	K562	blood
13	chr17:63159800-63161400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr17:63159800-63162800	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr17:63160000-63180400	Weak transcription	Brain Substantia Nigra	brain
16	chr17:63160200-63161400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr17:63160400-63164600	Weak transcription	Brain Anterior Caudate	brain
18	chr17:63160400-63166800	Weak transcription	Lung	lung
19	chr17:63160400-63167200	Weak transcription	Thymus	Thymus
20	chr17:63160400-63168800	Weak transcription	A549	lung
21	chr17:63160600-63169200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr17:63160600-63169600	Weak transcription	Spleen	Spleen
23	chr17:63160800-63161400	Weak transcription	HUVEC	blood vessel
24	chr17:63160800-63162800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr17:63160800-63166600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr17:63160800-63166600	Weak transcription	Fetal Thymus	thymus
27	chr17:63160800-63167800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr17:63160800-63169400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr17:63160800-63169400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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