Variant report

Variant	rs9915947
Chromosome Location	chr17:63239889-63239890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:63223927..63226638-chr17:63237839..63240467,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs190960	1.00[EUR][1000 genomes]
rs28376193	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28669831	1.00[EUR][1000 genomes]
rs28696681	1.00[EUR][1000 genomes]
rs28852789	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs299833	1.00[EUR][1000 genomes]
rs299836	1.00[EUR][1000 genomes]
rs4129025	1.00[EUR][1000 genomes]
rs59911976	1.00[EUR][1000 genomes]
rs8067101	1.00[EUR][1000 genomes]
rs8072705	1.00[EUR][1000 genomes]
rs9889760	1.00[EUR][1000 genomes]
rs9890163	1.00[YRI][hapmap]
rs9891825	1.00[EUR][1000 genomes]
rs9892174	1.00[EUR][1000 genomes]
rs9903465	1.00[EUR][1000 genomes]
rs9907340	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs9915448	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63239600-63240000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr17:63239600-63241000	Enhancers	Fetal Brain Male	brain
3	chr17:63239600-63241200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr17:63239800-63240000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr17:63239800-63240000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr17:63239800-63240000	Enhancers	Fetal Brain Female	brain
7	chr17:63239800-63240000	Enhancers	HSMM	muscle
8	chr17:63239800-63240200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr17:63239800-63240200	Enhancers	Fetal Muscle Leg	muscle
10	chr17:63239800-63240200	Enhancers	Stomach Smooth Muscle	stomach
11	chr17:63239800-63240200	Enhancers	NH-A	brain
12	chr17:63239800-63240400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr17:63239800-63240400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr17:63239800-63240400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr17:63239800-63240400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr17:63239800-63240400	Enhancers	Brain Angular Gyrus	brain
17	chr17:63239800-63240400	Enhancers	Brain Hippocampus Middle	brain
18	chr17:63239800-63240400	Enhancers	Brain Substantia Nigra	brain
19	chr17:63239800-63240600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr17:63239800-63240600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr17:63239800-63240600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr17:63239800-63240600	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr17:63239800-63240600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr17:63239800-63240600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr17:63239800-63240600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr17:63239800-63240600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr17:63239800-63240600	Enhancers	Brain Anterior Caudate	brain
28	chr17:63239800-63240600	Enhancers	Brain Cingulate Gyrus	brain
29	chr17:63239800-63240600	Flanking Active TSS	Brain Germinal Matrix	brain
30	chr17:63239800-63240600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr17:63239800-63240600	Enhancers	Fetal Stomach	stomach
32	chr17:63239800-63240800	Enhancers	H1 Cell Line	embryonic stem cell
33	chr17:63239800-63240800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr17:63239800-63240800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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