Variant report

Variant	rs8067101
Chromosome Location	chr17:63152041-63152042
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:63150789..63152778-chr17:63153829..63156170,2	MCF-7	breast:
2	chr17:63100401..63103168-chr17:63151819..63153531,2	MCF-7	breast:
3	chr17:63151108..63154306-chr17:63159891..63162115,3	MCF-7	breast:
4	chr17:62969941..62971541-chr17:63151298..63153116,2	MCF-7	breast:
5	chr17:63137155..63140141-chr17:63151319..63152963,2	MCF-7	breast:
6	chr17:63152009..63154619-chr17:63164947..63167346,2	K562	blood:
7	chr17:63146847..63149302-chr17:63150020..63152812,3	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs190960	1.00[EUR][1000 genomes]
rs28376193	1.00[EUR][1000 genomes]
rs28669831	1.00[EUR][1000 genomes]
rs28696681	1.00[EUR][1000 genomes]
rs28852789	1.00[EUR][1000 genomes]
rs299833	1.00[EUR][1000 genomes]
rs299836	1.00[EUR][1000 genomes]
rs4129025	1.00[EUR][1000 genomes]
rs59911976	1.00[EUR][1000 genomes]
rs61739547	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8072314	1.00[AMR][1000 genomes]
rs8072595	1.00[AMR][1000 genomes]
rs8072705	1.00[EUR][1000 genomes]
rs9889760	1.00[EUR][1000 genomes]
rs9891825	1.00[EUR][1000 genomes]
rs9892174	1.00[EUR][1000 genomes]
rs9903465	1.00[EUR][1000 genomes]
rs9907340	1.00[EUR][1000 genomes]
rs9915448	1.00[EUR][1000 genomes]
rs9915947	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63134400-63169000	Weak transcription	Colon Smooth Muscle	Colon
2	chr17:63141000-63175200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr17:63143600-63152200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr17:63143600-63169400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr17:63145800-63155400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr17:63145800-63167000	Weak transcription	Aorta	Aorta
7	chr17:63148400-63160000	Weak transcription	Lung	lung
8	chr17:63150200-63162800	Weak transcription	Fetal Stomach	stomach
9	chr17:63150400-63156800	Enhancers	Fetal Thymus	thymus
10	chr17:63150600-63152600	Enhancers	Dnd41	blood
11	chr17:63150600-63152800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr17:63150600-63153000	Enhancers	Primary hematopoietic stem cells	blood
13	chr17:63150800-63152400	Enhancers	Primary B cells from peripheral blood	blood
14	chr17:63150800-63152600	Enhancers	Primary B cells from cord blood	blood
15	chr17:63150800-63152600	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr17:63151000-63152200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr17:63151000-63152400	Enhancers	Fetal Intestine Large	intestine
18	chr17:63151000-63154400	Weak transcription	Fetal Kidney	kidney
19	chr17:63151000-63156800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr17:63151200-63152200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr17:63151400-63156400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr17:63151400-63160000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr17:63151600-63156600	Weak transcription	Brain Anterior Caudate	brain
24	chr17:63151600-63156800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr17:63151800-63152800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr17:63151800-63160200	Weak transcription	Spleen	Spleen
27	chr17:63152000-63152400	Weak transcription	Colonic Mucosa	Colon
28	chr17:63152000-63152400	Weak transcription	Stomach Mucosa	stomach
29	chr17:63152000-63152400	Weak transcription	Thymus	Thymus
30	chr17:63152000-63152600	Enhancers	GM12878-XiMat	blood
31	chr17:63152000-63152800	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr17:63152000-63152800	Weak transcription	Pancreas	Pancrea
33	chr17:63152000-63152800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr17:63152000-63153000	Weak transcription	Duodenum Mucosa	Duodenum
35	chr17:63152000-63153600	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr17:63152000-63154600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr17:63152000-63155400	Weak transcription	Fetal Intestine Small	intestine
38	chr17:63152000-63156600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr17:63152000-63159800	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links