Variant report

Variant	rs28380745
Chromosome Location	chr18:29778136-29778137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr18:29778084-29778189	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29777158..29779490-chr18:29781970..29783984,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000265279	TF binding region

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10502585	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11662835	1.00[ASN][1000 genomes]
rs11872463	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11873446	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11873581	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11874395	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11876428	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16962801	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16962803	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16962812	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16962878	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16962893	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28410852	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28562846	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28667990	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28759083	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34379307	1.00[ASN][1000 genomes]
rs4268826	1.00[ASN][1000 genomes]
rs6506963	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6506964	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6506965	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7226471	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7227035	1.00[ASN][1000 genomes]
rs7227067	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7231916	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72931860	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72939741	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8085389	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8095196	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8095362	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8095388	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8096290	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8098463	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8098766	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9945892	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9951980	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9953963	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9955566	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9961748	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9963993	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9965650	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv3442186	chr18:29775504-29778302	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29772200-29780400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr18:29774800-29780200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr18:29776800-29782200	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links