Variant report

Variant	rs9945892
Chromosome Location	chr18:29786094-29786095
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10502585	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11662835	1.00[ASN][1000 genomes]
rs11872463	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11873446	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11873581	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11874395	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11876428	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16962801	1.00[ASN][1000 genomes]
rs16962803	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16962812	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16962878	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16962893	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28380745	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28410852	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28562846	1.00[ASN][1000 genomes]
rs28667990	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28759083	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34379307	1.00[ASN][1000 genomes]
rs4268826	1.00[ASN][1000 genomes]
rs6506963	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6506964	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6506965	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7226471	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7227035	1.00[ASN][1000 genomes]
rs7227067	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7231916	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72931860	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72939741	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8085389	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8095196	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8095362	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8095388	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8096290	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8098463	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8098766	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9951980	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9953963	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9955566	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9961748	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9963993	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9965650	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29783000-29787200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr18:29783200-29786800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr18:29784600-29795200	Enhancers	Fetal Intestine Large	intestine
4	chr18:29785000-29787400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr18:29785600-29786800	Weak transcription	Fetal Intestine Small	intestine

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