Variant report

Variant	rs28562846
Chromosome Location	chr18:29778049-29778050
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29777158..29779490-chr18:29781970..29783984,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10502585	1.00[ASN][1000 genomes]
rs11662835	1.00[ASN][1000 genomes]
rs11872463	1.00[ASN][1000 genomes]
rs11873446	1.00[ASN][1000 genomes]
rs11873581	1.00[ASN][1000 genomes]
rs11874395	1.00[ASN][1000 genomes]
rs11876428	1.00[ASN][1000 genomes]
rs16962801	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16962803	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16962812	1.00[ASN][1000 genomes]
rs16962878	1.00[ASN][1000 genomes]
rs16962893	1.00[ASN][1000 genomes]
rs28380745	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28410852	1.00[ASN][1000 genomes]
rs28667990	1.00[ASN][1000 genomes]
rs28759083	1.00[ASN][1000 genomes]
rs34379307	1.00[ASN][1000 genomes]
rs4268826	1.00[ASN][1000 genomes]
rs6506963	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6506964	1.00[ASN][1000 genomes]
rs6506965	1.00[ASN][1000 genomes]
rs7226471	1.00[ASN][1000 genomes]
rs7227035	1.00[ASN][1000 genomes]
rs7227067	1.00[ASN][1000 genomes]
rs7231916	1.00[ASN][1000 genomes]
rs72931860	1.00[ASN][1000 genomes]
rs72939741	1.00[ASN][1000 genomes]
rs8085389	1.00[ASN][1000 genomes]
rs8095196	1.00[ASN][1000 genomes]
rs8095362	1.00[ASN][1000 genomes]
rs8095388	1.00[ASN][1000 genomes]
rs8096290	1.00[ASN][1000 genomes]
rs8098463	1.00[ASN][1000 genomes]
rs8098766	1.00[ASN][1000 genomes]
rs9945892	1.00[ASN][1000 genomes]
rs9951980	1.00[ASN][1000 genomes]
rs9953963	1.00[ASN][1000 genomes]
rs9955566	1.00[ASN][1000 genomes]
rs9961748	1.00[ASN][1000 genomes]
rs9963993	1.00[ASN][1000 genomes]
rs9965650	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv3442186	chr18:29775504-29778302	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29772200-29780400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr18:29774800-29780200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr18:29776800-29782200	Weak transcription	Aorta	Aorta

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