Variant report

Variant	rs9963993
Chromosome Location	chr18:29821160-29821161
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10502585	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11662835	1.00[ASN][1000 genomes]
rs11872463	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11873446	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11873581	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11874395	1.00[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11876428	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16962801	1.00[ASN][1000 genomes]
rs16962803	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs16962812	1.00[CEU][hapmap];0.83[TSI][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16962878	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16962893	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28380745	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28410852	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28562846	1.00[ASN][1000 genomes]
rs28667990	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28759083	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34379307	1.00[ASN][1000 genomes]
rs4268826	1.00[ASN][1000 genomes]
rs6506963	1.00[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6506964	1.00[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6506965	1.00[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7226471	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7227035	1.00[ASN][1000 genomes]
rs7227067	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7231916	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72931860	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72939741	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8085389	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8095196	1.00[CEU][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8095362	1.00[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8095388	1.00[CEU][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8096290	1.00[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8098463	1.00[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8098766	1.00[CEU][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9945892	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9951980	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9953963	1.00[CEU][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9955566	1.00[CEU][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9959058	1.00[CEU][hapmap];0.89[TSI][hapmap]
rs9961748	1.00[CEU][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9965650	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29817600-29822200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr18:29818800-29821200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr18:29819000-29821400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr18:29819000-29821600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr18:29819000-29821600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr18:29819000-29823400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr18:29819000-29823400	Weak transcription	Aorta	Aorta
8	chr18:29820800-29821200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr18:29820800-29821600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr18:29820800-29822800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr18:29821000-29821200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr18:29821000-29821800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr18:29821000-29822200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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