Variant report

Variant	rs72931860
Chromosome Location	chr18:29823010-29823011
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10502585	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11662835	1.00[ASN][1000 genomes]
rs11872463	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11873446	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11873581	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11874395	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11876428	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16962801	1.00[ASN][1000 genomes]
rs16962803	1.00[ASN][1000 genomes]
rs16962812	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16962878	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16962893	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28380745	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28410852	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28562846	1.00[ASN][1000 genomes]
rs28667990	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28759083	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34379307	1.00[ASN][1000 genomes]
rs4268826	1.00[ASN][1000 genomes]
rs6506963	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6506964	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6506965	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7226471	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7227035	1.00[ASN][1000 genomes]
rs7227067	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7231916	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72939741	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8085389	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8095196	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8095362	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8095388	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8096290	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8098463	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8098766	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9945892	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9951980	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9953963	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9955566	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9961748	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9963993	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9965650	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29819000-29823400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr18:29819000-29823400	Weak transcription	Aorta	Aorta
3	chr18:29821200-29824000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr18:29821200-29832400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr18:29821800-29825000	Weak transcription	Fetal Brain Male	brain
6	chr18:29822200-29823200	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr18:29822200-29823200	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr18:29822200-29831400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr18:29822400-29823200	Weak transcription	Fetal Brain Female	brain
10	chr18:29822400-29831200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr18:29822600-29831200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr18:29823000-29823400	Enhancers	Brain Hippocampus Middle	brain

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