Variant report

Variant	rs28667990
Chromosome Location	chr18:29789716-29789717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10502585	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11662835	1.00[ASN][1000 genomes]
rs11872463	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11873446	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11873581	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11874395	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11876428	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16962801	1.00[ASN][1000 genomes]
rs16962803	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16962812	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16962878	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16962893	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28380745	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28410852	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28562846	1.00[ASN][1000 genomes]
rs28759083	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34379307	1.00[ASN][1000 genomes]
rs4268826	1.00[ASN][1000 genomes]
rs6506963	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6506964	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6506965	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7226471	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7227035	1.00[ASN][1000 genomes]
rs7227067	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7231916	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72931860	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72939741	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8085389	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8095196	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8095362	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8095388	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8096290	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8098463	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8098766	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9945892	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9951980	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9953963	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9955566	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9961748	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9963993	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9965650	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29784600-29795200	Enhancers	Fetal Intestine Large	intestine
2	chr18:29786800-29791200	Enhancers	Liver	Liver
3	chr18:29786800-29795200	Enhancers	Fetal Intestine Small	intestine
4	chr18:29787200-29790400	Enhancers	Duodenum Mucosa	Duodenum
5	chr18:29788800-29790200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr18:29788800-29793000	Weak transcription	HepG2	liver
7	chr18:29789000-29790400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr18:29789400-29790400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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