The 2.0 version of rSNPBase

Variant report

Variant rs28401713
Chromosome Location chr15:52778095-52778096
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:75 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:52759200-52778200 Weak transcription Right Atrium heart
2 chr15:52772200-52781600 Weak transcription Colonic Mucosa Colon
3 chr15:52774600-52778200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
4 chr15:52774600-52778400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr15:52774600-52783800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
6 chr15:52774600-52802600 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr15:52774800-52778200 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
8 chr15:52774800-52780000 Weak transcription Rectal Mucosa Donor 31 rectum
9 chr15:52774800-52783200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
10 chr15:52775200-52778200 Weak transcription Brain Angular Gyrus brain
11 chr15:52775200-52778400 Weak transcription Thymus Thymus
12 chr15:52775200-52788400 Weak transcription Primary B cells from cord blood blood
13 chr15:52776000-52780000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
14 chr15:52776000-52780600 Weak transcription Primary T cells from cord blood blood
15 chr15:52776000-52783800 Weak transcription Breast Myoepithelial Primary Cells Breast
16 chr15:52776200-52779000 Weak transcription Left Ventricle heart
17 chr15:52776200-52780000 Weak transcription Fetal Thymus thymus
18 chr15:52776200-52780400 Weak transcription Primary T killer memory cells from peripheral blood blood
19 chr15:52776400-52778400 Weak transcription Skeletal Muscle Female skeletal muscle
20 chr15:52776400-52779000 Enhancers Muscle Satellite Cultured Cells --
21 chr15:52776400-52779400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
22 chr15:52776400-52779600 Weak transcription Primary B cells from peripheral blood blood
23 chr15:52776400-52780000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
24 chr15:52776400-52780000 Weak transcription Primary T killer naive cells fromperipheralblood blood
25 chr15:52776400-52780800 Weak transcription Duodenum Smooth Muscle Duodenum
26 chr15:52776400-52789000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
27 chr15:52776400-52796200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
28 chr15:52776600-52778200 Weak transcription Adipose Nuclei Adipose
29 chr15:52776600-52778200 Weak transcription HSMMtube muscle
30 chr15:52776600-52778400 Weak transcription Primary T helper naive cells from peripheral blood blood
31 chr15:52776600-52779000 Weak transcription Colon Smooth Muscle Colon
32 chr15:52776600-52779000 Weak transcription GM12878-XiMat blood
33 chr15:52776600-52779600 Weak transcription Skeletal Muscle Male skeletal muscle
34 chr15:52776600-52783800 Enhancers HUVEC blood vessel
35 chr15:52776800-52778200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr15:52776800-52778200 Weak transcription Brain Cingulate Gyrus brain
37 chr15:52776800-52778200 Weak transcription NH-A brain
38 chr15:52776800-52778600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr15:52776800-52778800 Weak transcription Primary T helper naive cells fromperipheralblood blood
40 chr15:52776800-52788800 Weak transcription Osteobl bone
41 chr15:52777000-52778200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
42 chr15:52777000-52778400 Weak transcription Primary T helper cells fromperipheralblood blood
43 chr15:52777000-52779200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
44 chr15:52777000-52780000 Weak transcription Monocytes-CD14+_RO01746 blood
45 chr15:52777000-52783400 Weak transcription NHDF-Ad bronchial
46 chr15:52777200-52778200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
47 chr15:52777200-52778200 Weak transcription Psoas Muscle Psoas
48 chr15:52777200-52778200 Weak transcription HSMM muscle
49 chr15:52777200-52778400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
50 chr15:52777200-52779400 Weak transcription Primary T cells fromperipheralblood blood

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Last update: Aug 31, 2015