The 2.0 version of rSNPBase

Variant report

Variant rs28545705
Chromosome Location chr15:52796870-52796871
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:52774600-52802600 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr15:52778600-52812400 Weak transcription Right Ventricle heart
3 chr15:52784800-52798800 Weak transcription Skeletal Muscle Female skeletal muscle
4 chr15:52785000-52801200 Weak transcription Right Atrium heart
5 chr15:52786400-52812400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr15:52789600-52806600 Weak transcription Breast Myoepithelial Primary Cells Breast
7 chr15:52791400-52798800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
8 chr15:52792000-52801600 Weak transcription Duodenum Smooth Muscle Duodenum
9 chr15:52792000-52815200 Weak transcription NHLF lung
10 chr15:52792200-52799400 Weak transcription Brain Angular Gyrus brain
11 chr15:52793600-52797200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
12 chr15:52794600-52803400 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
13 chr15:52794800-52797200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
14 chr15:52794800-52797800 Enhancers Primary B cells from peripheral blood blood
15 chr15:52795000-52800800 Weak transcription Brain Anterior Caudate brain
16 chr15:52795000-52802800 Weak transcription Colon Smooth Muscle Colon
17 chr15:52795200-52798800 Weak transcription Brain Cingulate Gyrus brain
18 chr15:52795200-52799000 Enhancers Primary monocytes fromperipheralblood blood
19 chr15:52795400-52799000 Weak transcription Brain Substantia Nigra brain
20 chr15:52795400-52801200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
21 chr15:52795600-52797400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
22 chr15:52795600-52797600 Enhancers Muscle Satellite Cultured Cells --
23 chr15:52795600-52797800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
24 chr15:52795600-52797800 Enhancers Adipose Nuclei Adipose
25 chr15:52795600-52798000 Enhancers Primary T helper cells PMA-I stimulated --
26 chr15:52796000-52797000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
27 chr15:52796000-52797000 Enhancers Primary T helper naive cells fromperipheralblood blood
28 chr15:52796000-52797000 Enhancers Osteobl bone
29 chr15:52796000-52797200 Enhancers NHEK skin
30 chr15:52796000-52797600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
31 chr15:52796000-52797800 Enhancers Primary T helper cells fromperipheralblood blood
32 chr15:52796000-52797800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr15:52796000-52798000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr15:52796000-52798000 Enhancers Primary T helper 17 cells PMA-I stimulated --
35 chr15:52796000-52798000 Enhancers HMEC breast
36 chr15:52796200-52797400 Enhancers Primary B cells from cord blood blood
37 chr15:52796200-52797600 Enhancers Primary T cells fromperipheralblood blood
38 chr15:52796400-52797000 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
39 chr15:52796400-52797600 Enhancers Brain Hippocampus Middle brain
40 chr15:52796400-52798200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr15:52796400-52798400 Enhancers Primary neutrophils fromperipheralblood blood
42 chr15:52796600-52800800 Weak transcription HSMMtube muscle
43 chr15:52796800-52797400 Enhancers GM12878-XiMat blood
44 chr15:52796800-52797400 Enhancers Monocytes-CD14+_RO01746 blood
45 chr15:52796800-52799400 Weak transcription Cortex derived primary cultured neurospheres brain
46 chr15:52796800-52799600 Weak transcription Brain Inferior Temporal Lobe brain
47 chr15:52796800-52801000 Weak transcription Primary T regulatory cells fromperipheralblood blood
48 chr15:52796800-52801600 Weak transcription HSMM muscle
49 chr15:52796800-52802200 Weak transcription Primary T helper naive cells from peripheral blood blood
50 chr15:52796800-52803200 Weak transcription NHDF-Ad bronchial

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Last update: Aug 31, 2015