Variant report

Variant	rs28421596
Chromosome Location	chr15:77219982-77219983
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77195473..77197812-chr15:77219400..77222194,2	K562	blood:
2	chr15:77212090..77213941-chr15:77219796..77221524,2	K562	blood:

Variant related genes	Relation type
ENSG00000140386	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11072640	1.00[AMR][1000 genomes]
rs11853683	1.00[AMR][1000 genomes]
rs1611866	0.86[AFR][1000 genomes]
rs2469198	1.00[AMR][1000 genomes]
rs2469207	1.00[AMR][1000 genomes]
rs2469237	1.00[AMR][1000 genomes]
rs28391551	1.00[AMR][1000 genomes]
rs28402797	1.00[AMR][1000 genomes]
rs28405838	0.86[AFR][1000 genomes]
rs28412669	1.00[AMR][1000 genomes]
rs28508056	1.00[AMR][1000 genomes]
rs28551558	0.80[AFR][1000 genomes]
rs28641730	1.00[AMR][1000 genomes]
rs28644501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28744566	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3099135	1.00[AMR][1000 genomes]
rs3110376	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3110377	1.00[AMR][1000 genomes]
rs3110380	0.82[AFR][1000 genomes]
rs3110383	1.00[AMR][1000 genomes]
rs3110386	1.00[AMR][1000 genomes]
rs4886833	1.00[AMR][1000 genomes]
rs7173333	1.00[AMR][1000 genomes]
rs7178723	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8026664	1.00[AMR][1000 genomes]
rs8035685	1.00[AMR][1000 genomes]
rs8038253	1.00[AMR][1000 genomes]
rs8038701	1.00[AMR][1000 genomes]
rs9920797	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	esv2758388	chr15:77170550-77373448	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv2760041	chr15:77170550-77373448	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	esv3399338	chr15:77219884-77220389	Inactive region	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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