Variant report

Variant	rs28433533
Chromosome Location	chr17:38089951-38089952
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38083081..38090987-chr17:38092901..38098446,8	K562	blood:
2	chr17:38083441..38086558-chr17:38087094..38090875,3	K562	blood:
3	chr17:38083121..38084985-chr17:38088063..38090617,2	MCF-7	breast:
4	chr17:38089487..38091759-chr17:38092539..38095742,3	K562	blood:
5	chr17:38081663..38087482-chr17:38088161..38094892,8	K562	blood:

Variant related genes	Relation type
ENSG00000264968	Chromatin interaction
ENSG00000172057	Chromatin interaction
ENSG00000204913	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13341681	0.87[AFR][1000 genomes]
rs28409251	0.87[AFR][1000 genomes]
rs28464000	0.87[AFR][1000 genomes]
rs28494476	0.87[AFR][1000 genomes]
rs28505218	0.87[AFR][1000 genomes]
rs28627663	0.87[AFR][1000 genomes]
rs28882824	0.87[AFR][1000 genomes]
rs9890508	0.87[AFR][1000 genomes]
rs9890819	0.87[AFR][1000 genomes]
rs9893628	0.87[AFR][1000 genomes]
rs9893933	0.87[AFR][1000 genomes]
rs9900885	0.87[AFR][1000 genomes]
rs9914556	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492308	chr17:38033039-38204458	Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38085000-38090000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr17:38085000-38090000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr17:38085000-38090000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr17:38085000-38090200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr17:38085000-38090200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr17:38085000-38095800	Weak transcription	Primary T cells from cord blood	blood
7	chr17:38085200-38090000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr17:38085200-38090200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr17:38085200-38090200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr17:38085200-38090200	Weak transcription	Gastric	stomach
11	chr17:38085200-38090400	Weak transcription	Right Ventricle	heart
12	chr17:38085200-38092200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr17:38085400-38090000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr17:38085400-38090000	Weak transcription	Psoas Muscle	Psoas
15	chr17:38085400-38090000	Weak transcription	Right Atrium	heart
16	chr17:38085400-38090400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr17:38085400-38090400	Weak transcription	Stomach Mucosa	stomach
18	chr17:38085400-38095800	Weak transcription	Brain Substantia Nigra	brain
19	chr17:38085400-38096000	Weak transcription	Pancreas	Pancrea
20	chr17:38085600-38094400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr17:38085600-38095600	Weak transcription	Fetal Intestine Small	intestine
22	chr17:38085800-38090400	Weak transcription	Fetal Kidney	kidney
23	chr17:38085800-38096000	Weak transcription	Brain Hippocampus Middle	brain
24	chr17:38086000-38090000	Weak transcription	Liver	Liver
25	chr17:38086000-38090400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr17:38086000-38095600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr17:38086200-38090000	Weak transcription	GM12878-XiMat	blood
28	chr17:38086200-38090200	Weak transcription	A549	lung
29	chr17:38086200-38090400	Weak transcription	HSMMtube	muscle
30	chr17:38086200-38095600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr17:38086400-38090000	Weak transcription	Fetal Heart	heart
32	chr17:38086400-38090000	Weak transcription	Fetal Thymus	thymus
33	chr17:38086400-38090000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr17:38086400-38092000	Weak transcription	K562	blood
35	chr17:38086400-38095600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr17:38086600-38090000	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr17:38086600-38090000	Weak transcription	HepG2	liver
38	chr17:38086600-38092000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr17:38086600-38092000	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr17:38086800-38095200	Weak transcription	NHLF	lung
41	chr17:38089400-38090400	Enhancers	Spleen	Spleen
42	chr17:38089400-38091400	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr17:38089400-38092000	Enhancers	Left Ventricle	heart
44	chr17:38089600-38090400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr17:38089600-38090400	Enhancers	Placenta	Placenta

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