The 2.0 version of rSNPBase

Variant report

Variant rs28494476
Chromosome Location chr17:38065957-38065958
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:105 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:38049200-38075400 Weak transcription Brain Cingulate Gyrus brain
2 chr17:38052600-38074200 Weak transcription Primary neutrophils fromperipheralblood blood
3 chr17:38055600-38077400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr17:38056800-38074600 Weak transcription NH-A brain
5 chr17:38057000-38068800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
6 chr17:38057200-38074400 Weak transcription Skeletal Muscle Male skeletal muscle
7 chr17:38057400-38075400 Weak transcription HSMM muscle
8 chr17:38057600-38076600 Weak transcription iPS-18 Cell Line embryonic stem cell
9 chr17:38057800-38077600 Weak transcription Muscle Satellite Cultured Cells --
10 chr17:38058000-38067600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
11 chr17:38058000-38074600 Weak transcription Left Ventricle heart
12 chr17:38058200-38076200 Weak transcription Fetal Lung lung
13 chr17:38058200-38077800 Weak transcription HUES64 Cell Line embryonic stem cell
14 chr17:38058400-38075400 Weak transcription H9 Cell Line embryonic stem cell
15 chr17:38058600-38075400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
16 chr17:38058600-38077400 Weak transcription Colon Smooth Muscle Colon
17 chr17:38058800-38071800 Weak transcription Stomach Mucosa stomach
18 chr17:38059000-38070400 Strong transcription Fetal Stomach stomach
19 chr17:38059000-38071000 Strong transcription Thymus Thymus
20 chr17:38059000-38082400 Weak transcription Psoas Muscle Psoas
21 chr17:38059200-38070600 Strong transcription Sigmoid Colon Sigmoid Colon
22 chr17:38059200-38075400 Weak transcription Brain Hippocampus Middle brain
23 chr17:38059400-38074000 Weak transcription Small Intestine intestine
24 chr17:38059600-38067800 Weak transcription Rectal Smooth Muscle rectum
25 chr17:38059800-38070800 Strong transcription Duodenum Mucosa Duodenum
26 chr17:38059800-38077200 Weak transcription Esophagus oesophagus
27 chr17:38060000-38066600 Weak transcription Brain Substantia Nigra brain
28 chr17:38060000-38077400 Weak transcription Monocytes-CD14+_RO01746 blood
29 chr17:38060200-38071400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
30 chr17:38060400-38069600 Weak transcription Primary T helper naive cells from peripheral blood blood
31 chr17:38060400-38069800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
32 chr17:38060400-38070800 Strong transcription Rectal Mucosa Donor 31 rectum
33 chr17:38060400-38071200 Strong transcription Primary mononuclear cells fromperipheralblood Blood
34 chr17:38060400-38081600 Weak transcription Fetal Brain Male brain
35 chr17:38060600-38073000 Weak transcription Primary hematopoietic stem cells blood
36 chr17:38060800-38068000 Strong transcription Adipose Nuclei Adipose
37 chr17:38060800-38075600 Strong transcription Primary T cells from cord blood blood
38 chr17:38061000-38068200 Strong transcription Rectal Mucosa Donor 29 rectum
39 chr17:38061000-38069800 Weak transcription Aorta Aorta
40 chr17:38061000-38072800 Weak transcription K562 blood
41 chr17:38061000-38074200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
42 chr17:38061200-38067000 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
43 chr17:38061200-38068000 Strong transcription Brain Anterior Caudate brain
44 chr17:38061200-38074000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
45 chr17:38061400-38068800 Strong transcription Fetal Muscle Trunk muscle
46 chr17:38061400-38075400 Weak transcription Right Ventricle heart
47 chr17:38061600-38067800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
48 chr17:38061600-38070800 Strong transcription Primary T helper naive cells fromperipheralblood blood
49 chr17:38061600-38071600 Strong transcription Fetal Intestine Small intestine
50 chr17:38061600-38074200 Strong transcription Fetal Thymus thymus

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Last update: Aug 31, 2015