Variant report
| Variant | rs13380812 |
|---|---|
| Chromosome Location | chr17:38025501-38025502 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr17:38016485..38022109-chr17:38022345..38027890,7 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000161405 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs13341681 | 1.00[AMR][1000 genomes] |
| rs28407584 | 1.00[AMR][1000 genomes] |
| rs28409251 | 1.00[AMR][1000 genomes] |
| rs28432878 | 1.00[AMR][1000 genomes] |
| rs28464000 | 1.00[AMR][1000 genomes] |
| rs28494476 | 1.00[AMR][1000 genomes] |
| rs28498893 | 1.00[AMR][1000 genomes] |
| rs28505218 | 1.00[AMR][1000 genomes] |
| rs28627663 | 1.00[AMR][1000 genomes] |
| rs28661251 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28673180 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28714172 | 1.00[AMR][1000 genomes] |
| rs28882824 | 1.00[AMR][1000 genomes] |
| rs61737968 | 1.00[AMR][1000 genomes] |
| rs62065168 | 1.00[AMR][1000 genomes] |
| rs62065210 | 1.00[AMR][1000 genomes] |
| rs9890508 | 1.00[AMR][1000 genomes] |
| rs9890819 | 1.00[AMR][1000 genomes] |
| rs9893628 | 1.00[AMR][1000 genomes] |
| rs9893933 | 1.00[AMR][1000 genomes] |
| rs9895237 | 1.00[AMR][1000 genomes] |
| rs9896961 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9897451 | 1.00[AMR][1000 genomes] |
| rs9897847 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9899977 | 1.00[AMR][1000 genomes] |
| rs9900885 | 1.00[AMR][1000 genomes] |
| rs9911163 | 1.00[AMR][1000 genomes] |
| rs9913746 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9914556 | 1.00[AMR][1000 genomes] |
| rs9916301 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1064787 | chr17:37892843-38054410 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
| 2 | nsv543342 | chr17:37892843-38054410 | Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
| 3 | esv1795575 | chr17:37974075-38041762 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr17:38024800-38027400 | Enhancers | Primary B cells from peripheral blood | blood |
| 2 | chr17:38025200-38026400 | Weak transcription | Primary B cells from cord blood | blood |
| 3 | chr17:38025200-38027000 | Enhancers | GM12878-XiMat | blood |
